Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00790

Experiment: ICP3_phage_411_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep1
144,435	+		CSW01_00785	0.51	+1.3
144,435	+		CSW01_00785	0.51	+1.8
144,443	-		CSW01_00785	0.52	+1.9
144,443	-		CSW01_00785	0.52	+1.7
144,454	+		CSW01_00785	0.53	-0.4
144,455	-		CSW01_00785	0.53	-0.7
144,526	+		CSW01_00785	0.60	+1.2
144,526	+		CSW01_00785	0.60	-4.0
144,527	+		CSW01_00785	0.60	+0.8
144,535	-		CSW01_00785	0.60	+0.9
144,535	-		CSW01_00785	0.60	+2.0
144,553	+		CSW01_00785	0.62	+0.6
144,561	-		CSW01_00785	0.63	+1.8
144,592	+		CSW01_00785	0.66	-0.0
144,593	-		CSW01_00785	0.66	+1.3
144,651	+		CSW01_00785	0.71	-0.2
144,651	+		CSW01_00785	0.71	-0.0
144,673	+		CSW01_00785	0.73	-0.1
144,673	+		CSW01_00785	0.73	+1.4
144,673	+		CSW01_00785	0.73	-2.3
144,673	+		CSW01_00785	0.73	-0.6
144,673	+		CSW01_00785	0.73	+0.4
144,673	+		CSW01_00785	0.73	-2.7
144,673	+		CSW01_00785	0.73	+0.8
144,673	+		CSW01_00785	0.73	+0.6
144,673	+		CSW01_00785	0.73	-3.5
144,673	+		CSW01_00785	0.73	+0.5
144,673	+		CSW01_00785	0.73	-0.1
144,673	+		CSW01_00785	0.73	-0.1
144,673	+		CSW01_00785	0.73	+0.6
144,678	+		CSW01_00785	0.73	-0.2
144,681	-		CSW01_00785	0.74	+0.9
144,681	-		CSW01_00785	0.74	+1.2
144,681	-		CSW01_00785	0.74	-1.0
144,681	-		CSW01_00785	0.74	-2.8
144,753	+		CSW01_00785	0.80	+0.2
144,868	+				+1.1
144,868	+				+1.2
144,874	+				+0.4
144,879	+				-3.5
144,887	-				+0.1
144,887	-				-0.8
144,929	+				+0.5
144,936	+				-2.8
144,954	-				+0.6
144,954	-				-0.1
145,071	+				+0.5
145,071	+				+2.0
145,071	+				-4.7
145,071	+				+0.4
145,077	+				+0.4
145,079	-				-3.0
145,079	-				-4.2
145,079	-				-0.7
145,079	-				-0.0
145,086	-				-0.1
145,097	+				-0.6
145,148	+				-4.0
145,198	+				+0.3
145,211	-				-2.3
145,277	+				-0.3
145,282	+				-0.7
145,285	-				-0.9
145,295	+				-1.6
145,317	+				-0.4
145,317	+				-0.3
145,317	+				+0.8
145,319	+				+0.8
145,319	+				-1.4
145,325	-				+0.6
145,325	-				+1.1
145,327	+				+0.5
145,327	-				-2.4
145,330	+				+0.1
145,338	-				+0.5
145,338	-				-0.7
145,348	-				-1.3
145,356	+				+1.0
145,361	+				-1.2
145,404	-				-1.6
145,414	+				+0.8
145,505	-				-3.5
145,538	-				-0.6
145,561	-		CSW01_00790	0.10	-0.8
145,561	-		CSW01_00790	0.10	+0.5
145,601	-		CSW01_00790	0.13	+0.1
145,644	+		CSW01_00790	0.15	-0.2
145,739	+		CSW01_00790	0.20	+0.7
145,739	+		CSW01_00790	0.20	-3.0
145,800	-		CSW01_00790	0.23	+1.8
145,800	-		CSW01_00790	0.23	-2.2
145,827	+		CSW01_00790	0.25	-3.8
145,837	+		CSW01_00790	0.25	-0.1
145,840	+		CSW01_00790	0.26	-1.7
145,864	+		CSW01_00790	0.27	-0.1
145,874	+		CSW01_00790	0.27	-0.1
145,877	-		CSW01_00790	0.28	-1.8
145,882	-		CSW01_00790	0.28	-2.3
145,882	-		CSW01_00790	0.28	-2.6
145,896	-		CSW01_00790	0.29	-1.4
145,932	+		CSW01_00790	0.31	-0.7
145,979	-		CSW01_00790	0.33	-1.1
145,980	-		CSW01_00790	0.33	-2.0
146,028	-		CSW01_00790	0.36	+0.4
146,034	-		CSW01_00790	0.36	-1.3
146,069	+		CSW01_00790	0.38	+1.5
146,077	-		CSW01_00790	0.38	-0.1
146,077	-		CSW01_00790	0.38	-0.1
146,077	-		CSW01_00790	0.38	+1.0
146,077	-		CSW01_00790	0.38	-1.1
146,077	-		CSW01_00790	0.38	-2.7
146,126	+		CSW01_00790	0.41	-1.1
146,192	+		CSW01_00790	0.45	-4.2
146,192	+		CSW01_00790	0.45	-0.8
146,200	-		CSW01_00790	0.45	+0.4
146,200	-		CSW01_00790	0.45	+1.0
146,200	-		CSW01_00790	0.45	+0.0
146,200	-		CSW01_00790	0.45	-2.3
146,252	+		CSW01_00790	0.48	+1.1
146,260	-		CSW01_00790	0.48	+1.4
146,264	+		CSW01_00790	0.49	-3.5
146,264	+		CSW01_00790	0.49	+0.8
146,295	-		CSW01_00790	0.50	+0.5
146,296	+		CSW01_00790	0.50	-0.3
146,296	+		CSW01_00790	0.50	-3.6
146,296	+		CSW01_00790	0.50	-2.4
146,364	+		CSW01_00790	0.54	+1.4
146,364	+		CSW01_00790	0.54	-0.5
146,364	+		CSW01_00790	0.54	+0.5
146,374	+		CSW01_00790	0.55	-3.5
146,374	+		CSW01_00790	0.55	-0.1
146,374	+		CSW01_00790	0.55	-2.2
146,423	+		CSW01_00790	0.57	-2.1
146,423	+		CSW01_00790	0.57	-0.5
146,431	-		CSW01_00790	0.58	-0.6
146,474	+		CSW01_00790	0.60	-0.2
146,485	+		CSW01_00790	0.61	+0.2
146,492	-		CSW01_00790	0.61	-0.2
146,492	-		CSW01_00790	0.61	+0.1
146,538	+		CSW01_00790	0.64	-0.4
146,546	-		CSW01_00790	0.64	-1.1
146,546	-		CSW01_00790	0.64	-1.6
146,570	-		CSW01_00790	0.65	+0.8
146,577	-		CSW01_00790	0.66	-3.4
146,592	+		CSW01_00790	0.67	+0.2
146,592	+		CSW01_00790	0.67	-3.3
146,592	+		CSW01_00790	0.67	+0.3
146,600	-		CSW01_00790	0.67	-0.5
146,671	+		CSW01_00790	0.71	-3.5
146,676	+		CSW01_00790	0.71	+1.4
146,676	+		CSW01_00790	0.71	+0.6
146,679	-		CSW01_00790	0.71	+0.7
146,684	-		CSW01_00790	0.72	-0.6
146,684	-		CSW01_00790	0.72	-4.1
146,754	+		CSW01_00790	0.75	+0.2
146,793	+		CSW01_00790	0.77	+0.7
146,822	-		CSW01_00790	0.79	-0.1
146,827	-		CSW01_00790	0.79	-1.2
146,847	+		CSW01_00790	0.80	-4.1
146,847	+		CSW01_00790	0.80	+0.2
146,858	+		CSW01_00790	0.81	+0.8
146,858	+		CSW01_00790	0.81	+0.4
146,865	-		CSW01_00790	0.81	+0.8
146,866	-		CSW01_00790	0.81	+0.2
146,871	-		CSW01_00790	0.82	+0.3
146,902	+		CSW01_00790	0.83	-0.0
146,909	+		CSW01_00790	0.84	-0.1
146,910	-		CSW01_00790	0.84	-0.9
146,914	+		CSW01_00790	0.84	-0.1
146,917	-		CSW01_00790	0.84	-0.9
146,922	-		CSW01_00790	0.84	-4.2
146,945	+		CSW01_00790	0.86	+0.3
146,953	-		CSW01_00790	0.86	+1.6
146,991	+		CSW01_00790	0.88	-0.6
147,003	+		CSW01_00790	0.89	-0.6
147,003	+		CSW01_00790	0.89	-0.8
147,003	+		CSW01_00790	0.89	-0.5
147,003	+		CSW01_00790	0.89	+0.9
147,003	+		CSW01_00790	0.89	-2.1
147,011	+		CSW01_00790	0.89	-0.1
147,011	-		CSW01_00790	0.89	+0.3
147,011	-		CSW01_00790	0.89	-1.8
147,025	-				-1.0
147,025	-				-0.3
147,025	-				-2.8
147,042	-				-0.5
147,092	+				+0.9
147,100	-				+1.6
147,152	+				+1.0
147,208	-				-4.5
147,216	-				+0.7
147,290	+				-1.1
147,304	+				+0.7
147,311	+				+1.5
147,319	+				-0.2
147,319	+				-2.3
147,321	+				+0.7
147,327	-				+0.3
147,329	+				-2.6
147,329	+				-1.4
147,329	+				+0.1
147,331	+				+0.5
147,337	-				-2.2
147,339	-				+1.6
147,449	+		CSW01_00795	0.11	+0.7
147,462	-		CSW01_00795	0.11	+0.1
147,467	-		CSW01_00795	0.12	+0.7
147,477	-		CSW01_00795	0.12	-3.9
147,482	-		CSW01_00795	0.13	-1.4
147,558	-		CSW01_00795	0.17	+0.2
147,558	-		CSW01_00795	0.17	-0.6
147,598	+		CSW01_00795	0.20	+0.9
147,639	-		CSW01_00795	0.22	-1.4
147,652	+		CSW01_00795	0.23	+0.5
147,660	-		CSW01_00795	0.24	+0.1
147,734	+		CSW01_00795	0.28	+1.5
147,765	+		CSW01_00795	0.30	+1.0
147,765	+		CSW01_00795	0.30	-3.0
147,765	+		CSW01_00795	0.30	-3.4
147,765	+		CSW01_00795	0.30	+0.7
147,765	+		CSW01_00795	0.30	-0.6
147,765	+		CSW01_00795	0.30	-0.1
147,773	-		CSW01_00795	0.31	+0.5
147,773	-		CSW01_00795	0.31	-0.0
147,773	-		CSW01_00795	0.31	-4.0
147,773	-		CSW01_00795	0.31	-0.5
147,773	-		CSW01_00795	0.31	+0.6
147,773	-		CSW01_00795	0.31	-2.2
147,798	+		CSW01_00795	0.32	+0.4
147,806	-		CSW01_00795	0.33	-0.2
147,832	+		CSW01_00795	0.34	-1.3
147,832	+		CSW01_00795	0.34	-0.5
147,862	-		CSW01_00795	0.36	-1.7
148,003	+		CSW01_00795	0.45	+1.2
148,021	-		CSW01_00795	0.46	-1.4
148,041	-		CSW01_00795	0.47	+1.2
148,045	-		CSW01_00795	0.48	+1.6
148,053	-		CSW01_00795	0.48	-4.7
148,076	-		CSW01_00795	0.50	+2.2
148,168	+		CSW01_00795	0.55	-2.7