Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00710

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00700 and CSW01_00705 are separated by 169 nucleotidesCSW01_00705 and CSW01_00710 are separated by 204 nucleotidesCSW01_00710 and CSW01_00715 are separated by 61 nucleotidesCSW01_00715 and CSW01_00720 are separated by 227 nucleotidesCSW01_00720 and CSW01_00725 overlap by 35 nucleotidesCSW01_00725 and CSW01_00730 are separated by 116 nucleotides CSW01_00700: CSW01_00700 - DNA starvation/stationary phase protection protein, at 132,792 to 133,262 _00700 CSW01_00705: CSW01_00705 - DUF2500 domain-containing protein, at 133,432 to 133,761 _00705 CSW01_00710: CSW01_00710 - DUF4145 domain-containing protein, at 133,966 to 134,334 _00710 CSW01_00715: CSW01_00715 - hypothetical protein, at 134,396 to 134,527 _00715 CSW01_00720: CSW01_00720 - hydrolase, at 134,755 to 134,871 _00720 CSW01_00725: CSW01_00725 - hypothetical protein, at 134,837 to 135,094 _00725 CSW01_00730: CSW01_00730 - lysoplasmalogenase, at 135,211 to 135,840 _00730 Position (kb) 133 134 135Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 133.000 kb on + strand, within CSW01_00700at 133.000 kb on + strand, within CSW01_00700at 133.000 kb on + strand, within CSW01_00700at 133.000 kb on + strand, within CSW01_00700at 133.000 kb on + strand, within CSW01_00700at 133.000 kb on + strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.008 kb on - strand, within CSW01_00700at 133.013 kb on + strand, within CSW01_00700at 133.013 kb on + strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.021 kb on - strand, within CSW01_00700at 133.090 kb on + strand, within CSW01_00700at 133.090 kb on + strand, within CSW01_00700at 133.098 kb on - strand, within CSW01_00700at 133.215 kb on - strand, within CSW01_00700at 133.270 kb on - strandat 133.308 kb on + strandat 133.361 kb on + strandat 133.430 kb on + strandat 133.438 kb on + strandat 133.446 kb on - strandat 133.484 kb on + strand, within CSW01_00705at 133.501 kb on - strand, within CSW01_00705at 133.510 kb on + strand, within CSW01_00705at 133.527 kb on + strand, within CSW01_00705at 133.563 kb on - strand, within CSW01_00705at 133.594 kb on + strand, within CSW01_00705at 133.608 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.644 kb on + strand, within CSW01_00705at 133.652 kb on - strand, within CSW01_00705at 133.652 kb on - strand, within CSW01_00705at 133.652 kb on - strand, within CSW01_00705at 133.713 kb on - strand, within CSW01_00705at 133.739 kb on - strandat 133.739 kb on - strandat 133.756 kb on + strandat 133.764 kb on - strandat 133.764 kb on - strandat 133.774 kb on - strandat 133.776 kb on - strandat 133.776 kb on - strandat 133.781 kb on - strandat 133.905 kb on + strandat 133.923 kb on - strandat 133.948 kb on + strandat 134.005 kb on + strand, within CSW01_00710at 134.023 kb on + strand, within CSW01_00710at 134.036 kb on - strand, within CSW01_00710at 134.036 kb on - strand, within CSW01_00710at 134.061 kb on - strand, within CSW01_00710at 134.159 kb on + strand, within CSW01_00710at 134.184 kb on - strand, within CSW01_00710at 134.222 kb on + strand, within CSW01_00710at 134.306 kb on + strandat 134.539 kb on + strandat 134.637 kb on - strandat 135.179 kb on + strandat 135.179 kb on + strandat 135.179 kb on + strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.200 kb on + strandat 135.274 kb on + strand, within CSW01_00730at 135.282 kb on + strand, within CSW01_00730at 135.290 kb on - strand, within CSW01_00730at 135.300 kb on - strand, within CSW01_00730

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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133,000 + CSW01_00700 0.44 +1.3
133,000 + CSW01_00700 0.44 -2.4
133,000 + CSW01_00700 0.44 -4.0
133,000 + CSW01_00700 0.44 -0.6
133,000 + CSW01_00700 0.44 -1.8
133,000 + CSW01_00700 0.44 -0.6
133,008 - CSW01_00700 0.46 +0.1
133,008 - CSW01_00700 0.46 -1.2
133,008 - CSW01_00700 0.46 -2.4
133,008 - CSW01_00700 0.46 -0.4
133,008 - CSW01_00700 0.46 +0.4
133,008 - CSW01_00700 0.46 +1.3
133,008 - CSW01_00700 0.46 -2.9
133,008 - CSW01_00700 0.46 -0.3
133,008 - CSW01_00700 0.46 +0.5
133,008 - CSW01_00700 0.46 -0.5
133,013 + CSW01_00700 0.47 -1.7
133,013 + CSW01_00700 0.47 +0.8
133,021 - CSW01_00700 0.49 +1.2
133,021 - CSW01_00700 0.49 -0.1
133,021 - CSW01_00700 0.49 +0.7
133,021 - CSW01_00700 0.49 -0.5
133,021 - CSW01_00700 0.49 -1.9
133,021 - CSW01_00700 0.49 -0.3
133,021 - CSW01_00700 0.49 -3.4
133,090 + CSW01_00700 0.63 -3.3
133,090 + CSW01_00700 0.63 -2.6
133,098 - CSW01_00700 0.65 -0.5
133,215 - CSW01_00700 0.90 -0.2
133,270 - -1.7
133,308 + +0.7
133,361 + -0.0
133,430 + -1.0
133,438 + -1.7
133,446 - +0.5
133,484 + CSW01_00705 0.16 +0.4
133,501 - CSW01_00705 0.21 -3.7
133,510 + CSW01_00705 0.24 +0.1
133,527 + CSW01_00705 0.29 +0.3
133,563 - CSW01_00705 0.40 -0.2
133,594 + CSW01_00705 0.49 +1.5
133,608 + CSW01_00705 0.53 +0.7
133,644 + CSW01_00705 0.64 +2.1
133,644 + CSW01_00705 0.64 -1.9
133,644 + CSW01_00705 0.64 +0.5
133,644 + CSW01_00705 0.64 +0.6
133,644 + CSW01_00705 0.64 -1.5
133,644 + CSW01_00705 0.64 +0.4
133,652 - CSW01_00705 0.67 +0.2
133,652 - CSW01_00705 0.67 -0.5
133,652 - CSW01_00705 0.67 +0.3
133,713 - CSW01_00705 0.85 -0.2
133,739 - -0.9
133,739 - -2.5
133,756 + +1.3
133,764 - +0.4
133,764 - +0.9
133,774 - +1.1
133,776 - +0.1
133,776 - -0.1
133,781 - -0.0
133,905 + +0.4
133,923 - -1.2
133,948 + +2.3
134,005 + CSW01_00710 0.11 -0.8
134,023 + CSW01_00710 0.15 -2.9
134,036 - CSW01_00710 0.19 +0.6
134,036 - CSW01_00710 0.19 +0.3
134,061 - CSW01_00710 0.26 -3.2
134,159 + CSW01_00710 0.52 +0.3
134,184 - CSW01_00710 0.59 -2.9
134,222 + CSW01_00710 0.69 -4.0
134,306 + -0.8
134,539 + -2.6
134,637 - -1.7
135,179 + +2.2
135,179 + -0.1
135,179 + +0.8
135,187 - +0.8
135,187 - -3.5
135,200 + +0.7
135,274 + CSW01_00730 0.10 +0.4
135,282 + CSW01_00730 0.11 -1.6
135,290 - CSW01_00730 0.13 +1.3
135,300 - CSW01_00730 0.14 +1.2

Or see this region's nucleotide sequence