Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00595

Experiment: ICP3_phage_411_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep1
110,575	+		CSW01_00590	0.34	-0.6
110,575	+		CSW01_00590	0.34	-1.7
110,575	+		CSW01_00590	0.34	+0.3
110,575	+		CSW01_00590	0.34	-0.9
110,582	-		CSW01_00590	0.34	-2.3
110,607	+		CSW01_00590	0.36	-4.0
110,607	+		CSW01_00590	0.36	-2.3
110,607	+		CSW01_00590	0.36	+0.0
110,607	+		CSW01_00590	0.36	+1.9
110,607	+		CSW01_00590	0.36	+0.1
110,615	-		CSW01_00590	0.37	+0.9
110,615	-		CSW01_00590	0.37	+1.1
110,615	-		CSW01_00590	0.37	-0.4
110,615	-		CSW01_00590	0.37	+1.4
110,616	-		CSW01_00590	0.37	-2.1
110,623	+		CSW01_00590	0.37	+0.7
110,650	-		CSW01_00590	0.39	+1.6
110,660	-		CSW01_00590	0.40	-3.9
110,663	+		CSW01_00590	0.40	+0.1
110,663	+		CSW01_00590	0.40	+0.9
110,671	-		CSW01_00590	0.41	+0.3
110,702	+		CSW01_00590	0.43	-0.9
110,710	-		CSW01_00590	0.43	-3.9
110,740	+		CSW01_00590	0.46	+0.8
110,748	-		CSW01_00590	0.46	-0.7
110,756	+		CSW01_00590	0.47	+1.3
110,764	-		CSW01_00590	0.47	-0.7
110,790	-		CSW01_00590	0.49	-1.6
110,790	-		CSW01_00590	0.49	-0.5
110,827	-		CSW01_00590	0.52	-4.3
110,835	+		CSW01_00590	0.52	-2.5
110,854	+		CSW01_00590	0.54	-2.2
110,884	-		CSW01_00590	0.56	+0.5
110,961	+		CSW01_00590	0.62	-2.3
110,969	+		CSW01_00590	0.62	-0.3
110,985	-		CSW01_00590	0.63	-2.0
111,013	+		CSW01_00590	0.65	+0.9
111,023	+		CSW01_00590	0.66	+1.2
111,023	+		CSW01_00590	0.66	+0.2
111,023	+		CSW01_00590	0.66	-1.2
111,028	+		CSW01_00590	0.66	+0.9
111,028	+		CSW01_00590	0.66	-0.3
111,028	+		CSW01_00590	0.66	+0.3
111,031	-		CSW01_00590	0.67	+0.2
111,031	-		CSW01_00590	0.67	-1.6
111,031	-		CSW01_00590	0.67	-3.7
111,036	-		CSW01_00590	0.67	-0.7
111,088	+		CSW01_00590	0.71	-0.7
111,129	+		CSW01_00590	0.74	+1.0
111,167	+		CSW01_00590	0.76	+0.2
111,167	+		CSW01_00590	0.76	+0.4
111,180	+		CSW01_00590	0.77	+0.1
111,209	+		CSW01_00590	0.79	+0.7
111,229	+		CSW01_00590	0.81	-1.6
111,292	+		CSW01_00590	0.85	+0.2
111,292	+		CSW01_00590	0.85	-4.9
111,300	-		CSW01_00590	0.86	+0.2
111,300	-		CSW01_00590	0.86	+0.3
111,300	-		CSW01_00590	0.86	-0.1
111,300	-		CSW01_00590	0.86	-0.9
111,300	-		CSW01_00590	0.86	-2.4
111,327	+		CSW01_00590	0.88	-1.0
111,338	+		CSW01_00590	0.89	+0.8
111,338	+		CSW01_00590	0.89	-2.8
111,347	-		CSW01_00590	0.89	-1.6
111,436	-				-3.3
111,497	-				-2.0
111,530	+				-3.2
111,574	+				-2.9
111,592	-				-2.5
111,671	-				-0.4
111,677	+				-2.3
111,685	-		CSW01_00595	0.11	+0.4
111,724	+		CSW01_00595	0.14	-3.8
111,724	+		CSW01_00595	0.14	-3.6
111,743	+		CSW01_00595	0.15	-1.0
111,768	-		CSW01_00595	0.18	+3.5
111,856	+		CSW01_00595	0.25	+0.2
111,864	-		CSW01_00595	0.26	+1.1
111,866	+		CSW01_00595	0.26	-2.9
111,866	+		CSW01_00595	0.26	-2.7
111,866	+		CSW01_00595	0.26	-4.1
111,866	+		CSW01_00595	0.26	+0.1
111,874	-		CSW01_00595	0.26	-1.4
111,874	-		CSW01_00595	0.26	-2.1
111,874	-		CSW01_00595	0.26	-1.2
111,874	-		CSW01_00595	0.26	-3.1
111,874	-		CSW01_00595	0.26	-0.4
111,874	-		CSW01_00595	0.26	+0.5
111,874	-		CSW01_00595	0.26	-0.3
111,874	-		CSW01_00595	0.26	-2.5
111,907	+		CSW01_00595	0.29	-0.2
111,913	+		CSW01_00595	0.30	-2.9
111,915	+		CSW01_00595	0.30	-4.3
111,925	+		CSW01_00595	0.31	-2.5
111,925	+		CSW01_00595	0.31	-1.1
112,000	+		CSW01_00595	0.37	-0.3
112,036	-		CSW01_00595	0.40	-2.3
112,088	+		CSW01_00595	0.44	-0.0
112,098	+		CSW01_00595	0.45	-2.9
112,119	-		CSW01_00595	0.47	+0.6
112,119	-		CSW01_00595	0.47	-0.1
112,134	+		CSW01_00595	0.48	-2.5
112,137	+		CSW01_00595	0.48	-0.2
112,138	-		CSW01_00595	0.48	-0.6
112,142	-		CSW01_00595	0.49	-2.7
112,171	-		CSW01_00595	0.51	-0.5
112,173	-		CSW01_00595	0.51	-4.8
112,193	-		CSW01_00595	0.53	-4.0
112,203	-		CSW01_00595	0.54	+0.1
112,220	+		CSW01_00595	0.55	+0.6
112,227	+		CSW01_00595	0.56	+0.4
112,250	+		CSW01_00595	0.58	-4.3
112,328	+		CSW01_00595	0.64	-4.0
112,336	-		CSW01_00595	0.65	-0.8
112,336	-		CSW01_00595	0.65	+1.5
112,360	+		CSW01_00595	0.67	-1.6
112,401	-		CSW01_00595	0.70	+1.2
112,462	+		CSW01_00595	0.76	+0.0
112,470	-		CSW01_00595	0.76	-0.2
112,514	+		CSW01_00595	0.80	-3.7
112,522	-		CSW01_00595	0.81	+0.4
112,522	-		CSW01_00595	0.81	+0.5
112,523	+		CSW01_00595	0.81	+1.7
112,523	+		CSW01_00595	0.81	+0.6
112,523	+		CSW01_00595	0.81	-3.7
112,523	+		CSW01_00595	0.81	-1.8
112,523	+		CSW01_00595	0.81	-3.5
112,523	+		CSW01_00595	0.81	+0.5
112,531	-		CSW01_00595	0.81	-0.6
112,531	-		CSW01_00595	0.81	+0.4
112,531	-		CSW01_00595	0.81	-0.5
112,531	-		CSW01_00595	0.81	-0.5
112,531	-		CSW01_00595	0.81	+0.8
112,531	-		CSW01_00595	0.81	-3.3
112,577	+		CSW01_00595	0.85	-0.6
112,648	-				-2.4
112,670	+				+0.7
112,693	-				-2.6
112,720	-				-1.2
112,764	+				+0.6
112,790	+				-1.3
112,820	+				+0.2
112,820	+				-2.7
112,820	+				+2.2
112,845	+				-1.7
112,847	+				+0.2
112,847	+				-2.5
112,880	+		CSW01_00600	0.11	+1.8
112,880	+		CSW01_00600	0.11	-1.0
112,888	-		CSW01_00600	0.11	-0.2
112,898	+		CSW01_00600	0.12	-1.6
112,899	-		CSW01_00600	0.12	-2.2
112,899	-		CSW01_00600	0.12	+0.3
112,933	+		CSW01_00600	0.15	-0.9
112,933	+		CSW01_00600	0.15	-3.6
112,935	+		CSW01_00600	0.15	+0.9
112,943	-		CSW01_00600	0.16	-0.1
112,958	-		CSW01_00600	0.17	-0.4
112,963	-		CSW01_00600	0.18	-2.9
112,969	+		CSW01_00600	0.18	-0.7
112,989	+		CSW01_00600	0.20	-3.1
112,989	+		CSW01_00600	0.20	-3.1
112,997	-		CSW01_00600	0.20	-2.8
112,999	-		CSW01_00600	0.21	-1.1
113,006	-		CSW01_00600	0.21	-0.8
113,024	-		CSW01_00600	0.23	-3.8
113,024	-		CSW01_00600	0.23	-1.0
113,053	+		CSW01_00600	0.25	+1.1
113,053	+		CSW01_00600	0.25	-2.1
113,055	+		CSW01_00600	0.25	-0.4
113,063	-		CSW01_00600	0.26	-0.5
113,070	-		CSW01_00600	0.27	-1.7
113,108	-		CSW01_00600	0.30	-0.2
113,211	+		CSW01_00600	0.38	+0.9
113,211	+		CSW01_00600	0.38	-2.9
113,224	-		CSW01_00600	0.39	-3.4
113,237	-		CSW01_00600	0.41	+1.8
113,263	+		CSW01_00600	0.43	-1.9
113,263	+		CSW01_00600	0.43	+1.2
113,263	+		CSW01_00600	0.43	+2.5
113,263	+		CSW01_00600	0.43	-2.7
113,263	+		CSW01_00600	0.43	-2.2
113,263	+		CSW01_00600	0.43	-0.4
113,266	-		CSW01_00600	0.43	-4.3
113,266	-		CSW01_00600	0.43	-2.8
113,271	-		CSW01_00600	0.43	-1.2
113,271	-		CSW01_00600	0.43	-1.4
113,271	-		CSW01_00600	0.43	-1.4
113,310	-		CSW01_00600	0.47	+0.3
113,325	+		CSW01_00600	0.48	+0.1
113,325	+		CSW01_00600	0.48	-1.1
113,325	+		CSW01_00600	0.48	-0.3
113,333	-		CSW01_00600	0.48	-0.1
113,333	-		CSW01_00600	0.48	-2.4
113,333	-		CSW01_00600	0.48	+0.3
113,352	-		CSW01_00600	0.50	-0.1
113,359	+		CSW01_00600	0.51	+0.6
113,364	+		CSW01_00600	0.51	-0.7
113,364	+		CSW01_00600	0.51	+2.4
113,374	+		CSW01_00600	0.52	-0.8
113,374	+		CSW01_00600	0.52	+1.5
113,583	-		CSW01_00600	0.69	-4.1
113,640	-		CSW01_00600	0.74	+0.1
113,651	-		CSW01_00600	0.75	-2.4
113,664	+		CSW01_00600	0.76	-3.9
113,664	+		CSW01_00600	0.76	-1.7
113,672	-		CSW01_00600	0.77	-3.2
113,672	-		CSW01_00600	0.77	-2.4
113,711	+		CSW01_00600	0.80	-1.6
113,711	+		CSW01_00600	0.80	-2.8
113,719	-		CSW01_00600	0.81	-0.5
113,719	-		CSW01_00600	0.81	+1.3
113,746	+		CSW01_00600	0.83	+0.4