Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00300

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00290 and CSW01_00295 are separated by 185 nucleotidesCSW01_00295 and CSW01_00300 are separated by 177 nucleotidesCSW01_00300 and CSW01_00305 are separated by 57 nucleotidesCSW01_00305 and CSW01_00310 are separated by 280 nucleotides CSW01_00290: CSW01_00290 - gamma carbonic anhydrase family protein, at 52,757 to 53,311 _00290 CSW01_00295: CSW01_00295 - hypothetical protein, at 53,497 to 53,637 _00295 CSW01_00300: CSW01_00300 - 16S ribosomal RNA, at 53,815 to 55,364 _00300 CSW01_00305: CSW01_00305 - tRNA-Ala, at 55,422 to 55,497 _00305 CSW01_00310: CSW01_00310 - 23S ribosomal RNA, at 55,778 to 58,693 _00310 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 52.843 kb on + strand, within CSW01_00290at 52.851 kb on - strand, within CSW01_00290at 52.876 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.921 kb on + strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.929 kb on - strand, within CSW01_00290at 52.978 kb on - strand, within CSW01_00290at 52.978 kb on - strand, within CSW01_00290at 52.985 kb on + strand, within CSW01_00290at 52.985 kb on + strand, within CSW01_00290at 52.986 kb on - strand, within CSW01_00290at 53.027 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.029 kb on + strand, within CSW01_00290at 53.034 kb on + strand, within CSW01_00290at 53.035 kb on + strand, within CSW01_00290at 53.035 kb on + strand, within CSW01_00290at 53.036 kb on - strand, within CSW01_00290at 53.036 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.037 kb on - strand, within CSW01_00290at 53.041 kb on + strand, within CSW01_00290at 53.043 kb on - strand, within CSW01_00290at 53.048 kb on + strand, within CSW01_00290at 53.048 kb on + strand, within CSW01_00290at 53.056 kb on - strand, within CSW01_00290at 53.106 kb on + strand, within CSW01_00290at 53.106 kb on + strand, within CSW01_00290at 53.114 kb on - strand, within CSW01_00290at 53.116 kb on + strand, within CSW01_00290at 53.116 kb on + strand, within CSW01_00290at 53.124 kb on - strand, within CSW01_00290at 53.124 kb on - strand, within CSW01_00290at 53.126 kb on + strand, within CSW01_00290at 53.141 kb on + strand, within CSW01_00290at 53.161 kb on + strand, within CSW01_00290at 53.166 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.215 kb on + strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.223 kb on - strand, within CSW01_00290at 53.233 kb on + strand, within CSW01_00290at 53.236 kb on + strand, within CSW01_00290at 53.238 kb on + strand, within CSW01_00290at 53.241 kb on - strand, within CSW01_00290at 53.241 kb on - strand, within CSW01_00290at 53.244 kb on - strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.250 kb on + strand, within CSW01_00290at 53.258 kb on - strandat 53.258 kb on - strandat 53.258 kb on - strandat 53.263 kb on + strandat 53.270 kb on - strandat 53.281 kb on - strandat 53.296 kb on + strandat 53.296 kb on + strandat 53.304 kb on - strandat 53.331 kb on + strandat 53.346 kb on - strandat 53.351 kb on - strandat 53.376 kb on - strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.378 kb on + strandat 53.386 kb on - strandat 53.386 kb on - strandat 53.520 kb on - strand, within CSW01_00295at 53.520 kb on - strand, within CSW01_00295at 53.520 kb on - strand, within CSW01_00295

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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52,843 + CSW01_00290 0.15 +0.4
52,851 - CSW01_00290 0.17 +0.7
52,876 + CSW01_00290 0.21 -0.7
52,921 + CSW01_00290 0.30 -0.9
52,921 + CSW01_00290 0.30 -1.3
52,921 + CSW01_00290 0.30 -0.1
52,921 + CSW01_00290 0.30 -2.9
52,929 - CSW01_00290 0.31 -0.6
52,929 - CSW01_00290 0.31 +0.6
52,929 - CSW01_00290 0.31 -1.5
52,929 - CSW01_00290 0.31 -0.4
52,929 - CSW01_00290 0.31 -3.2
52,929 - CSW01_00290 0.31 -4.0
52,978 - CSW01_00290 0.40 +1.2
52,978 - CSW01_00290 0.40 -1.7
52,985 + CSW01_00290 0.41 +1.5
52,985 + CSW01_00290 0.41 +0.7
52,986 - CSW01_00290 0.41 -2.4
53,027 + CSW01_00290 0.49 -0.5
53,029 + CSW01_00290 0.49 +0.5
53,029 + CSW01_00290 0.49 -1.6
53,029 + CSW01_00290 0.49 -0.9
53,029 + CSW01_00290 0.49 -3.3
53,029 + CSW01_00290 0.49 -1.7
53,034 + CSW01_00290 0.50 +0.3
53,035 + CSW01_00290 0.50 -2.9
53,035 + CSW01_00290 0.50 -0.5
53,036 - CSW01_00290 0.50 -2.9
53,036 - CSW01_00290 0.50 -0.0
53,037 - CSW01_00290 0.50 -1.4
53,037 - CSW01_00290 0.50 +0.0
53,037 - CSW01_00290 0.50 -1.8
53,041 + CSW01_00290 0.51 +0.3
53,043 - CSW01_00290 0.52 -2.5
53,048 + CSW01_00290 0.52 -0.5
53,048 + CSW01_00290 0.52 +0.9
53,056 - CSW01_00290 0.54 +0.1
53,106 + CSW01_00290 0.63 -1.0
53,106 + CSW01_00290 0.63 -0.4
53,114 - CSW01_00290 0.64 -1.4
53,116 + CSW01_00290 0.65 -0.3
53,116 + CSW01_00290 0.65 -0.4
53,124 - CSW01_00290 0.66 -2.1
53,124 - CSW01_00290 0.66 -1.9
53,126 + CSW01_00290 0.66 -0.7
53,141 + CSW01_00290 0.69 +0.8
53,161 + CSW01_00290 0.73 +0.2
53,166 + CSW01_00290 0.74 -0.4
53,215 + CSW01_00290 0.83 -1.1
53,215 + CSW01_00290 0.83 -1.0
53,215 + CSW01_00290 0.83 -0.1
53,215 + CSW01_00290 0.83 -2.4
53,215 + CSW01_00290 0.83 +2.4
53,215 + CSW01_00290 0.83 +0.7
53,215 + CSW01_00290 0.83 +1.6
53,215 + CSW01_00290 0.83 -1.9
53,215 + CSW01_00290 0.83 +0.4
53,215 + CSW01_00290 0.83 -1.2
53,215 + CSW01_00290 0.83 -2.5
53,215 + CSW01_00290 0.83 -2.4
53,215 + CSW01_00290 0.83 -0.2
53,215 + CSW01_00290 0.83 -0.9
53,223 - CSW01_00290 0.84 +0.2
53,223 - CSW01_00290 0.84 +0.3
53,223 - CSW01_00290 0.84 +0.2
53,223 - CSW01_00290 0.84 -2.8
53,223 - CSW01_00290 0.84 +0.5
53,223 - CSW01_00290 0.84 +0.3
53,223 - CSW01_00290 0.84 +0.3
53,233 + CSW01_00290 0.86 +1.4
53,236 + CSW01_00290 0.86 -1.6
53,238 + CSW01_00290 0.87 -2.3
53,241 - CSW01_00290 0.87 -0.3
53,241 - CSW01_00290 0.87 +0.8
53,244 - CSW01_00290 0.88 -2.1
53,250 + CSW01_00290 0.89 -2.0
53,250 + CSW01_00290 0.89 +0.3
53,250 + CSW01_00290 0.89 +1.3
53,258 - +0.1
53,258 - +0.4
53,258 - -0.2
53,263 + +0.4
53,270 - -2.7
53,281 - +0.1
53,296 + +0.1
53,296 + -0.7
53,304 - +0.2
53,331 + +0.9
53,346 - +0.8
53,351 - +0.5
53,376 - -1.9
53,378 + +1.6
53,378 + -0.2
53,378 + +0.1
53,378 + -0.4
53,378 + +0.2
53,378 + -0.4
53,386 - -0.4
53,386 - -0.3
53,520 - CSW01_00295 0.16 +1.1
53,520 - CSW01_00295 0.16 -0.6
53,520 - CSW01_00295 0.16 -3.0

Or see this region's nucleotide sequence