Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4060

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4059 and Ac3H11_4060 are separated by 241 nucleotidesAc3H11_4060 and Ac3H11_4061 are separated by 94 nucleotides Ac3H11_4059 - Lipid A export ATP-binding/permease protein MsbA, at 302,477 to 304,783 _4059 Ac3H11_4060 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 305,025 to 307,217 _4060 Ac3H11_4061 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 307,312 to 309,891 _4061 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.102 kb on - strand, within Ac3H11_4059at 304.102 kb on - strand, within Ac3H11_4059at 304.182 kb on + strand, within Ac3H11_4059at 304.182 kb on + strand, within Ac3H11_4059at 304.183 kb on - strand, within Ac3H11_4059at 304.183 kb on - strand, within Ac3H11_4059at 304.854 kb on - strandat 304.854 kb on - strandat 304.886 kb on + strandat 304.886 kb on + strandat 304.886 kb on + strandat 304.887 kb on - strandat 304.887 kb on - strandat 304.887 kb on - strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.081 kb on + strandat 305.082 kb on - strandat 305.082 kb on - strandat 305.091 kb on + strandat 305.092 kb on - strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.346 kb on - strand, within Ac3H11_4060at 305.365 kb on - strand, within Ac3H11_4060at 305.512 kb on - strand, within Ac3H11_4060at 305.512 kb on - strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.877 kb on + strand, within Ac3H11_4060at 305.877 kb on + strand, within Ac3H11_4060at 305.878 kb on - strand, within Ac3H11_4060at 305.878 kb on - strand, within Ac3H11_4060at 305.889 kb on + strand, within Ac3H11_4060at 306.073 kb on - strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.253 kb on - strand, within Ac3H11_4060at 306.742 kb on - strand, within Ac3H11_4060at 306.742 kb on - strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 307.227 kb on - strandat 307.227 kb on - strandat 307.296 kb on + strandat 307.297 kb on - strandat 307.297 kb on - strandat 307.315 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.604 kb on - strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.622 kb on - strand, within Ac3H11_4061at 307.657 kb on + strand, within Ac3H11_4061at 307.658 kb on - strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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304,037 + Ac3H11_4059 0.68 -1.1
304,037 + Ac3H11_4059 0.68 -0.6
304,037 + Ac3H11_4059 0.68 -0.8
304,037 + Ac3H11_4059 0.68 -0.6
304,037 + Ac3H11_4059 0.68 -0.2
304,037 + Ac3H11_4059 0.68 +1.8
304,037 + Ac3H11_4059 0.68 -0.4
304,037 + Ac3H11_4059 0.68 +1.0
304,038 - Ac3H11_4059 0.68 -0.8
304,038 - Ac3H11_4059 0.68 -0.4
304,038 - Ac3H11_4059 0.68 -1.7
304,041 + Ac3H11_4059 0.68 +0.1
304,041 + Ac3H11_4059 0.68 -0.3
304,041 + Ac3H11_4059 0.68 -0.2
304,041 + Ac3H11_4059 0.68 +0.5
304,041 + Ac3H11_4059 0.68 -1.4
304,041 + Ac3H11_4059 0.68 -0.1
304,041 + Ac3H11_4059 0.68 +0.4
304,041 + Ac3H11_4059 0.68 -0.5
304,041 + Ac3H11_4059 0.68 -0.8
304,041 + Ac3H11_4059 0.68 -1.2
304,041 + Ac3H11_4059 0.68 -0.1
304,041 + Ac3H11_4059 0.68 -0.6
304,041 + Ac3H11_4059 0.68 -0.2
304,041 + Ac3H11_4059 0.68 -0.8
304,041 + Ac3H11_4059 0.68 -0.9
304,042 - Ac3H11_4059 0.68 -1.0
304,042 - Ac3H11_4059 0.68 -2.1
304,042 - Ac3H11_4059 0.68 -0.2
304,042 - Ac3H11_4059 0.68 +0.5
304,042 - Ac3H11_4059 0.68 -1.8
304,042 - Ac3H11_4059 0.68 -0.5
304,042 - Ac3H11_4059 0.68 -1.9
304,042 - Ac3H11_4059 0.68 -0.1
304,042 - Ac3H11_4059 0.68 -0.9
304,042 - Ac3H11_4059 0.68 +0.2
304,042 - Ac3H11_4059 0.68 -1.4
304,042 - Ac3H11_4059 0.68 -1.1
304,042 - Ac3H11_4059 0.68 -0.8
304,102 - Ac3H11_4059 0.70 +0.7
304,102 - Ac3H11_4059 0.70 -1.9
304,182 + Ac3H11_4059 0.74 -0.4
304,182 + Ac3H11_4059 0.74 +0.3
304,183 - Ac3H11_4059 0.74 -0.7
304,183 - Ac3H11_4059 0.74 -0.5
304,854 - -0.6
304,854 - -0.1
304,886 + +1.7
304,886 + +0.2
304,886 + -1.9
304,887 - -0.8
304,887 - +0.6
304,887 - +0.2
305,064 + -2.0
305,064 + -0.7
305,064 + -0.8
305,064 + -1.2
305,065 - -2.3
305,065 - -0.8
305,065 - -1.1
305,065 - -1.5
305,065 - -0.5
305,065 - -1.1
305,065 - +0.1
305,065 - -2.5
305,065 - -2.4
305,065 - +0.3
305,081 + -4.2
305,082 - -1.2
305,082 - -2.9
305,091 + +2.1
305,092 - +0.3
305,139 + -1.0
305,139 + -1.9
305,345 + Ac3H11_4060 0.15 -0.3
305,345 + Ac3H11_4060 0.15 -1.6
305,345 + Ac3H11_4060 0.15 -3.2
305,345 + Ac3H11_4060 0.15 +0.3
305,345 + Ac3H11_4060 0.15 -0.6
305,345 + Ac3H11_4060 0.15 -2.2
305,346 - Ac3H11_4060 0.15 -0.8
305,365 - Ac3H11_4060 0.16 -1.2
305,512 - Ac3H11_4060 0.22 -0.4
305,512 - Ac3H11_4060 0.22 -4.3
305,602 + Ac3H11_4060 0.26 -1.0
305,602 + Ac3H11_4060 0.26 -1.2
305,602 + Ac3H11_4060 0.26 -0.7
305,603 - Ac3H11_4060 0.26 -0.2
305,603 - Ac3H11_4060 0.26 +0.0
305,603 - Ac3H11_4060 0.26 -0.8
305,603 - Ac3H11_4060 0.26 -0.2
305,603 - Ac3H11_4060 0.26 -2.8
305,603 - Ac3H11_4060 0.26 -1.8
305,877 + Ac3H11_4060 0.39 -0.6
305,877 + Ac3H11_4060 0.39 -1.6
305,878 - Ac3H11_4060 0.39 +0.7
305,878 - Ac3H11_4060 0.39 -2.4
305,889 + Ac3H11_4060 0.39 -0.2
306,073 - Ac3H11_4060 0.48 -0.3
306,252 + Ac3H11_4060 0.56 -1.1
306,252 + Ac3H11_4060 0.56 -2.5
306,252 + Ac3H11_4060 0.56 -1.3
306,252 + Ac3H11_4060 0.56 -0.6
306,253 - Ac3H11_4060 0.56 -1.7
306,742 - Ac3H11_4060 0.78 +0.7
306,742 - Ac3H11_4060 0.78 -1.1
306,945 + Ac3H11_4060 0.88 +0.2
306,945 + Ac3H11_4060 0.88 -2.2
306,945 + Ac3H11_4060 0.88 -1.5
306,946 - Ac3H11_4060 0.88 -1.6
306,946 - Ac3H11_4060 0.88 -1.7
306,946 - Ac3H11_4060 0.88 +0.0
306,946 - Ac3H11_4060 0.88 -0.9
306,946 - Ac3H11_4060 0.88 -0.8
306,946 - Ac3H11_4060 0.88 -0.6
306,946 - Ac3H11_4060 0.88 -4.1
306,946 - Ac3H11_4060 0.88 -0.8
307,227 - +0.1
307,227 - -0.4
307,296 + -1.2
307,297 - -0.8
307,297 - -0.7
307,315 + -2.2
307,319 + -4.6
307,319 + -0.1
307,319 + -0.1
307,319 + -2.0
307,320 - +0.5
307,320 - -0.8
307,320 - +1.1
307,603 + Ac3H11_4061 0.11 +0.8
307,603 + Ac3H11_4061 0.11 -1.9
307,603 + Ac3H11_4061 0.11 -0.6
307,604 - Ac3H11_4061 0.11 -2.5
307,621 + Ac3H11_4061 0.12 -0.4
307,621 + Ac3H11_4061 0.12 -1.8
307,622 - Ac3H11_4061 0.12 -0.6
307,657 + Ac3H11_4061 0.13 -2.4
307,658 - Ac3H11_4061 0.13 -1.1
308,116 + Ac3H11_4061 0.31 -0.6
308,116 + Ac3H11_4061 0.31 -1.1
308,116 + Ac3H11_4061 0.31 -0.7
308,117 - Ac3H11_4061 0.31 -4.1
308,117 - Ac3H11_4061 0.31 -1.6
308,117 - Ac3H11_4061 0.31 -1.0

Or see this region's nucleotide sequence