Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3121

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3119 and Ac3H11_3120 are separated by 21 nucleotidesAc3H11_3120 and Ac3H11_3121 overlap by 14 nucleotidesAc3H11_3121 and Ac3H11_3122 are separated by 140 nucleotides Ac3H11_3119 - OmpA/MotB, at 21,471 to 22,493 _3119 Ac3H11_3120 - hypothetical protein, at 22,515 to 22,745 _3120 Ac3H11_3121 - hypothetical protein, at 22,732 to 22,875 _3121 Ac3H11_3122 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 23,016 to 25,301 _3122 Position (kb) 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.793 kb on + strand, within Ac3H11_3119at 21.793 kb on + strand, within Ac3H11_3119at 21.793 kb on + strand, within Ac3H11_3119at 21.794 kb on - strand, within Ac3H11_3119at 21.901 kb on + strand, within Ac3H11_3119at 21.902 kb on - strand, within Ac3H11_3119at 21.902 kb on - strand, within Ac3H11_3119at 21.902 kb on - strand, within Ac3H11_3119at 21.922 kb on + strand, within Ac3H11_3119at 21.922 kb on + strand, within Ac3H11_3119at 21.922 kb on + strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 21.923 kb on - strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.021 kb on + strand, within Ac3H11_3119at 22.022 kb on - strand, within Ac3H11_3119at 22.022 kb on - strand, within Ac3H11_3119at 22.030 kb on + strand, within Ac3H11_3119at 22.031 kb on - strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.096 kb on + strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.097 kb on - strand, within Ac3H11_3119at 22.130 kb on - strand, within Ac3H11_3119at 22.169 kb on - strand, within Ac3H11_3119at 22.214 kb on - strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.261 kb on + strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.262 kb on - strand, within Ac3H11_3119at 22.343 kb on - strand, within Ac3H11_3119at 22.541 kb on + strand, within Ac3H11_3120at 22.541 kb on + strand, within Ac3H11_3120at 22.541 kb on + strand, within Ac3H11_3120at 22.542 kb on - strand, within Ac3H11_3120at 22.687 kb on + strand, within Ac3H11_3120at 22.688 kb on - strand, within Ac3H11_3120at 22.873 kb on + strandat 22.873 kb on + strandat 22.873 kb on + strandat 22.874 kb on - strandat 23.086 kb on + strandat 23.087 kb on - strandat 23.087 kb on - strandat 23.095 kb on + strandat 23.293 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.308 kb on + strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.309 kb on - strand, within Ac3H11_3122at 23.625 kb on - strand, within Ac3H11_3122at 23.625 kb on - strand, within Ac3H11_3122at 23.709 kb on + strand, within Ac3H11_3122at 23.709 kb on + strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122at 23.710 kb on - strand, within Ac3H11_3122

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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21,793 + Ac3H11_3119 0.31 +0.1
21,793 + Ac3H11_3119 0.31 +1.9
21,793 + Ac3H11_3119 0.31 -0.4
21,794 - Ac3H11_3119 0.32 -1.9
21,901 + Ac3H11_3119 0.42 +0.5
21,902 - Ac3H11_3119 0.42 +0.6
21,902 - Ac3H11_3119 0.42 -2.0
21,902 - Ac3H11_3119 0.42 +0.5
21,922 + Ac3H11_3119 0.44 +1.9
21,922 + Ac3H11_3119 0.44 +0.0
21,922 + Ac3H11_3119 0.44 -1.8
21,923 - Ac3H11_3119 0.44 +0.2
21,923 - Ac3H11_3119 0.44 -0.3
21,923 - Ac3H11_3119 0.44 +0.9
21,923 - Ac3H11_3119 0.44 +0.6
21,923 - Ac3H11_3119 0.44 +0.6
21,923 - Ac3H11_3119 0.44 -0.1
22,021 + Ac3H11_3119 0.54 +0.0
22,021 + Ac3H11_3119 0.54 -0.7
22,021 + Ac3H11_3119 0.54 +1.0
22,021 + Ac3H11_3119 0.54 -0.0
22,021 + Ac3H11_3119 0.54 +1.6
22,022 - Ac3H11_3119 0.54 +0.4
22,022 - Ac3H11_3119 0.54 +0.6
22,030 + Ac3H11_3119 0.55 +0.6
22,031 - Ac3H11_3119 0.55 +0.8
22,096 + Ac3H11_3119 0.61 -0.2
22,096 + Ac3H11_3119 0.61 -0.6
22,096 + Ac3H11_3119 0.61 -0.8
22,097 - Ac3H11_3119 0.61 -1.5
22,097 - Ac3H11_3119 0.61 -0.3
22,097 - Ac3H11_3119 0.61 -0.0
22,097 - Ac3H11_3119 0.61 -0.8
22,130 - Ac3H11_3119 0.64 +0.7
22,169 - Ac3H11_3119 0.68 -0.9
22,214 - Ac3H11_3119 0.73 +1.0
22,261 + Ac3H11_3119 0.77 -1.5
22,261 + Ac3H11_3119 0.77 +1.0
22,261 + Ac3H11_3119 0.77 +0.4
22,261 + Ac3H11_3119 0.77 +1.2
22,261 + Ac3H11_3119 0.77 -0.1
22,261 + Ac3H11_3119 0.77 +0.9
22,262 - Ac3H11_3119 0.77 +0.0
22,262 - Ac3H11_3119 0.77 -0.9
22,262 - Ac3H11_3119 0.77 -0.1
22,343 - Ac3H11_3119 0.85 +0.6
22,541 + Ac3H11_3120 0.11 +0.3
22,541 + Ac3H11_3120 0.11 +0.3
22,541 + Ac3H11_3120 0.11 -2.6
22,542 - Ac3H11_3120 0.12 -0.1
22,687 + Ac3H11_3120 0.74 +0.3
22,688 - Ac3H11_3120 0.75 -0.0
22,873 + -0.2
22,873 + -2.7
22,873 + -3.6
22,874 - +1.1
23,086 + +1.5
23,087 - -0.6
23,087 - -0.3
23,095 + -1.5
23,293 + Ac3H11_3122 0.12 -2.3
23,308 + Ac3H11_3122 0.13 -0.4
23,308 + Ac3H11_3122 0.13 -0.0
23,308 + Ac3H11_3122 0.13 -0.7
23,309 - Ac3H11_3122 0.13 +0.2
23,309 - Ac3H11_3122 0.13 -0.4
23,309 - Ac3H11_3122 0.13 +0.9
23,309 - Ac3H11_3122 0.13 -0.6
23,625 - Ac3H11_3122 0.27 -0.3
23,625 - Ac3H11_3122 0.27 -1.3
23,709 + Ac3H11_3122 0.30 -2.8
23,709 + Ac3H11_3122 0.30 -0.4
23,710 - Ac3H11_3122 0.30 -0.0
23,710 - Ac3H11_3122 0.30 +0.6
23,710 - Ac3H11_3122 0.30 +0.8
23,710 - Ac3H11_3122 0.30 -0.6

Or see this region's nucleotide sequence