Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_312

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_310 and Ac3H11_311 are separated by 383 nucleotidesAc3H11_311 and Ac3H11_312 are separated by 93 nucleotidesAc3H11_312 and Ac3H11_313 are separated by 35 nucleotides Ac3H11_310 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 131,074 to 132,654 _310 Ac3H11_311 - hypothetical protein, at 133,038 to 133,157 _311 Ac3H11_312 - DedA protein, at 133,251 to 133,964 _312 Ac3H11_313 - DNA mismatch repair protein MutL, at 134,000 to 136,054 _313 Position (kb) 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.317 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.374 kb on + strand, within Ac3H11_310at 132.375 kb on - strand, within Ac3H11_310at 132.375 kb on - strand, within Ac3H11_310at 132.375 kb on - strand, within Ac3H11_310at 132.375 kb on - strand, within Ac3H11_310at 132.438 kb on + strand, within Ac3H11_310at 132.438 kb on + strand, within Ac3H11_310at 132.438 kb on + strand, within Ac3H11_310at 132.438 kb on + strand, within Ac3H11_310at 132.438 kb on + strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.439 kb on - strand, within Ac3H11_310at 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.669 kb on + strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.670 kb on - strandat 132.737 kb on + strandat 132.737 kb on + strandat 132.737 kb on + strandat 132.737 kb on + strandat 132.737 kb on + strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.738 kb on - strandat 132.745 kb on + strandat 132.745 kb on + strandat 132.745 kb on + strandat 132.746 kb on - strandat 132.791 kb on - strandat 132.813 kb on + strandat 132.813 kb on + strandat 132.813 kb on + strandat 132.814 kb on - strandat 132.814 kb on - strandat 132.814 kb on - strandat 132.841 kb on - strandat 132.841 kb on - strandat 132.841 kb on - strandat 132.841 kb on - strandat 132.887 kb on - strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.912 kb on + strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.913 kb on - strandat 132.935 kb on - strandat 133.926 kb on - strandat 133.996 kb on + strandat 133.997 kb on - strandat 134.488 kb on - strand, within Ac3H11_313at 134.488 kb on - strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.840 kb on + strand, within Ac3H11_313at 134.841 kb on - strand, within Ac3H11_313at 134.841 kb on - strand, within Ac3H11_313at 134.841 kb on - strand, within Ac3H11_313at 134.841 kb on - strand, within Ac3H11_313at 134.841 kb on - strand, within Ac3H11_313at 134.846 kb on + strand, within Ac3H11_313at 134.846 kb on + strand, within Ac3H11_313at 134.846 kb on + strand, within Ac3H11_313at 134.847 kb on - strand, within Ac3H11_313at 134.847 kb on - strand, within Ac3H11_313at 134.847 kb on - strand, within Ac3H11_313at 134.847 kb on - strand, within Ac3H11_313at 134.903 kb on + strand, within Ac3H11_313at 134.904 kb on - strand, within Ac3H11_313at 134.904 kb on - strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.939 kb on + strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.940 kb on - strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.948 kb on + strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313at 134.949 kb on - strand, within Ac3H11_313

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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132,317 + Ac3H11_310 0.79 -1.4
132,374 + Ac3H11_310 0.82 -2.5
132,374 + Ac3H11_310 0.82 -1.2
132,374 + Ac3H11_310 0.82 -2.1
132,374 + Ac3H11_310 0.82 +0.4
132,374 + Ac3H11_310 0.82 -0.2
132,374 + Ac3H11_310 0.82 +0.7
132,375 - Ac3H11_310 0.82 -0.7
132,375 - Ac3H11_310 0.82 +0.4
132,375 - Ac3H11_310 0.82 +1.8
132,375 - Ac3H11_310 0.82 +1.6
132,438 + Ac3H11_310 0.86 +1.3
132,438 + Ac3H11_310 0.86 +0.4
132,438 + Ac3H11_310 0.86 -0.2
132,438 + Ac3H11_310 0.86 -0.3
132,438 + Ac3H11_310 0.86 -0.6
132,439 - Ac3H11_310 0.86 -0.6
132,439 - Ac3H11_310 0.86 +2.1
132,439 - Ac3H11_310 0.86 -0.6
132,439 - Ac3H11_310 0.86 -0.5
132,439 - Ac3H11_310 0.86 +1.7
132,439 - Ac3H11_310 0.86 -0.3
132,439 - Ac3H11_310 0.86 +0.5
132,439 - Ac3H11_310 0.86 +1.2
132,439 - Ac3H11_310 0.86 +0.7
132,439 - Ac3H11_310 0.86 +0.7
132,439 - Ac3H11_310 0.86 +0.5
132,439 - Ac3H11_310 0.86 -0.1
132,439 - Ac3H11_310 0.86 +1.4
132,669 + -2.6
132,669 + +0.1
132,669 + +0.6
132,669 + -1.0
132,669 + -0.6
132,669 + +0.5
132,669 + +0.3
132,669 + -1.1
132,669 + +0.9
132,669 + -0.3
132,670 - +0.8
132,670 - +0.3
132,670 - -0.4
132,670 - +1.9
132,670 - -0.2
132,670 - -0.1
132,670 - +0.2
132,670 - -3.7
132,737 + +0.3
132,737 + +0.7
132,737 + -1.7
132,737 + +0.5
132,737 + -1.5
132,738 - +1.6
132,738 - +0.4
132,738 - +0.8
132,738 - -0.4
132,738 - +0.5
132,738 - -1.3
132,738 - +0.0
132,738 - +0.2
132,745 + -1.7
132,745 + +1.2
132,745 + +0.3
132,746 - -1.3
132,791 - -0.6
132,813 + -3.2
132,813 + +0.2
132,813 + -2.2
132,814 - -0.8
132,814 - +0.8
132,814 - +1.4
132,841 - -1.9
132,841 - -0.5
132,841 - -0.1
132,841 - +0.9
132,887 - +0.8
132,912 + +0.4
132,912 + +0.9
132,912 + -0.7
132,912 + +0.1
132,912 + +1.9
132,912 + +0.7
132,912 + -1.9
132,913 - -0.1
132,913 - -0.0
132,913 - -0.9
132,913 - -2.0
132,913 - +0.2
132,913 - +3.0
132,913 - -0.8
132,935 - +0.9
133,926 - +0.3
133,996 + -1.1
133,997 - +1.8
134,488 - Ac3H11_313 0.24 -0.5
134,488 - Ac3H11_313 0.24 +0.3
134,840 + Ac3H11_313 0.41 -1.8
134,840 + Ac3H11_313 0.41 -0.4
134,840 + Ac3H11_313 0.41 -0.5
134,840 + Ac3H11_313 0.41 -0.3
134,840 + Ac3H11_313 0.41 +0.8
134,840 + Ac3H11_313 0.41 +0.5
134,840 + Ac3H11_313 0.41 +0.3
134,841 - Ac3H11_313 0.41 +2.2
134,841 - Ac3H11_313 0.41 +2.3
134,841 - Ac3H11_313 0.41 +1.1
134,841 - Ac3H11_313 0.41 +0.6
134,841 - Ac3H11_313 0.41 -0.2
134,846 + Ac3H11_313 0.41 +1.3
134,846 + Ac3H11_313 0.41 +0.6
134,846 + Ac3H11_313 0.41 -1.8
134,847 - Ac3H11_313 0.41 +0.0
134,847 - Ac3H11_313 0.41 +1.1
134,847 - Ac3H11_313 0.41 +0.5
134,847 - Ac3H11_313 0.41 -2.4
134,903 + Ac3H11_313 0.44 +1.5
134,904 - Ac3H11_313 0.44 +0.1
134,904 - Ac3H11_313 0.44 -0.1
134,939 + Ac3H11_313 0.46 -1.0
134,939 + Ac3H11_313 0.46 -0.3
134,939 + Ac3H11_313 0.46 -1.9
134,939 + Ac3H11_313 0.46 +0.2
134,939 + Ac3H11_313 0.46 +1.1
134,939 + Ac3H11_313 0.46 -0.8
134,939 + Ac3H11_313 0.46 +0.1
134,939 + Ac3H11_313 0.46 -1.8
134,939 + Ac3H11_313 0.46 +0.7
134,939 + Ac3H11_313 0.46 -1.7
134,939 + Ac3H11_313 0.46 -0.5
134,940 - Ac3H11_313 0.46 +0.4
134,940 - Ac3H11_313 0.46 -0.4
134,940 - Ac3H11_313 0.46 -0.1
134,940 - Ac3H11_313 0.46 +0.9
134,940 - Ac3H11_313 0.46 +0.7
134,940 - Ac3H11_313 0.46 +2.1
134,940 - Ac3H11_313 0.46 +1.7
134,940 - Ac3H11_313 0.46 +1.1
134,940 - Ac3H11_313 0.46 -0.3
134,940 - Ac3H11_313 0.46 -2.1
134,940 - Ac3H11_313 0.46 +0.9
134,948 + Ac3H11_313 0.46 -0.1
134,948 + Ac3H11_313 0.46 +0.7
134,948 + Ac3H11_313 0.46 -0.5
134,948 + Ac3H11_313 0.46 -1.5
134,948 + Ac3H11_313 0.46 +1.9
134,948 + Ac3H11_313 0.46 -0.4
134,948 + Ac3H11_313 0.46 -0.2
134,948 + Ac3H11_313 0.46 -1.3
134,948 + Ac3H11_313 0.46 -0.4
134,949 - Ac3H11_313 0.46 +0.4
134,949 - Ac3H11_313 0.46 +2.7
134,949 - Ac3H11_313 0.46 -2.7
134,949 - Ac3H11_313 0.46 +0.7
134,949 - Ac3H11_313 0.46 +0.1
134,949 - Ac3H11_313 0.46 -0.3
134,949 - Ac3H11_313 0.46 -0.7
134,949 - Ac3H11_313 0.46 +0.0
134,949 - Ac3H11_313 0.46 -2.5
134,949 - Ac3H11_313 0.46 +0.2

Or see this region's nucleotide sequence