Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2890 and Ac3H11_2891 are separated by 3 nucleotides Ac3H11_2891 and Ac3H11_2892 are separated by 25 nucleotides Ac3H11_2892 and Ac3H11_2893 are separated by 76 nucleotides Ac3H11_2893 and Ac3H11_2894 are separated by 132 nucleotides
Ac3H11_2890 - Thioredoxin-like protein clustered with PA0057, at 1,201,600 to 1,202,262
_2890
Ac3H11_2891 - hypothetical protein, at 1,202,266 to 1,202,541
_2891
Ac3H11_2892 - Possible membrane protein, at 1,202,567 to 1,203,013
_2892
Ac3H11_2893 - Metallo-beta-lactamase superfamily protein PA0057, at 1,203,090 to 1,203,956
_2893
Ac3H11_2894 - LysR-family transcriptional regulator clustered with PA0057, at 1,204,089 to 1,204,982
_2894
Position (kb)
1203
1204 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1202.201 kb on + strand at 1202.201 kb on + strand at 1202.202 kb on - strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.232 kb on - strand at 1202.379 kb on - strand, within Ac3H11_2891 at 1202.766 kb on + strand, within Ac3H11_2892 at 1202.766 kb on + strand, within Ac3H11_2892 at 1202.767 kb on - strand, within Ac3H11_2892 at 1202.847 kb on + strand, within Ac3H11_2892 at 1202.847 kb on + strand, within Ac3H11_2892 at 1202.862 kb on + strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1203.091 kb on + strand at 1203.092 kb on - strand at 1203.236 kb on - strand, within Ac3H11_2893 at 1203.236 kb on - strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893 at 1203.697 kb on + strand, within Ac3H11_2893 at 1203.721 kb on + strand, within Ac3H11_2893 at 1203.721 kb on + strand, within Ac3H11_2893 at 1203.721 kb on + strand, within Ac3H11_2893 at 1203.722 kb on - strand, within Ac3H11_2893 at 1203.725 kb on + strand, within Ac3H11_2893 at 1203.725 kb on + strand, within Ac3H11_2893 at 1203.725 kb on + strand, within Ac3H11_2893 at 1203.725 kb on + strand, within Ac3H11_2893 at 1203.726 kb on - strand, within Ac3H11_2893 at 1203.788 kb on + strand, within Ac3H11_2893 at 1203.826 kb on + strand, within Ac3H11_2893 at 1203.826 kb on + strand, within Ac3H11_2893 at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.871 kb on + strand at 1203.872 kb on - strand at 1203.872 kb on - strand at 1203.872 kb on - strand at 1203.988 kb on + strand at 1204.029 kb on - strand at 1204.089 kb on - strand at 1204.169 kb on + strand at 1204.170 kb on - strand at 1204.194 kb on + strand, within Ac3H11_2894 at 1204.195 kb on - strand, within Ac3H11_2894 at 1204.195 kb on - strand, within Ac3H11_2894 at 1204.603 kb on - strand, within Ac3H11_2894 at 1204.603 kb on - strand, within Ac3H11_2894 at 1204.665 kb on + strand, within Ac3H11_2894 at 1204.666 kb on - strand, within Ac3H11_2894 at 1204.666 kb on - strand, within Ac3H11_2894 at 1204.813 kb on - strand, within Ac3H11_2894 at 1204.827 kb on + strand, within Ac3H11_2894 at 1204.827 kb on + strand, within Ac3H11_2894 at 1204.827 kb on + strand, within Ac3H11_2894 at 1204.828 kb on - strand, within Ac3H11_2894 at 1204.890 kb on + strand, within Ac3H11_2894 at 1204.890 kb on + strand, within Ac3H11_2894 at 1204.891 kb on - strand, within Ac3H11_2894 at 1204.891 kb on - strand, within Ac3H11_2894 at 1204.891 kb on - strand, within Ac3H11_2894 at 1204.891 kb on - strand, within Ac3H11_2894 at 1204.891 kb on - strand, within Ac3H11_2894 at 1204.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,202,201 + -0.3 1,202,201 + -0.1 1,202,202 - +0.1 1,202,231 + +0.7 1,202,231 + -0.3 1,202,231 + +0.2 1,202,231 + +1.3 1,202,231 + +2.7 1,202,231 + +0.5 1,202,232 - -0.6 1,202,379 - Ac3H11_2891 0.41 -1.1 1,202,766 + Ac3H11_2892 0.45 -0.2 1,202,766 + Ac3H11_2892 0.45 +0.9 1,202,767 - Ac3H11_2892 0.45 +0.3 1,202,847 + Ac3H11_2892 0.63 -2.3 1,202,847 + Ac3H11_2892 0.63 -0.7 1,202,862 + Ac3H11_2892 0.66 +0.5 1,202,863 - Ac3H11_2892 0.66 -2.3 1,202,863 - Ac3H11_2892 0.66 +0.3 1,202,863 - Ac3H11_2892 0.66 -2.1 1,202,863 - Ac3H11_2892 0.66 +0.1 1,203,091 + +0.1 1,203,092 - -0.9 1,203,236 - Ac3H11_2893 0.17 +0.4 1,203,236 - Ac3H11_2893 0.17 -2.1 1,203,247 + Ac3H11_2893 0.18 +0.9 1,203,247 + Ac3H11_2893 0.18 +0.9 1,203,247 + Ac3H11_2893 0.18 -0.3 1,203,247 + Ac3H11_2893 0.18 +0.5 1,203,247 + Ac3H11_2893 0.18 -3.2 1,203,248 - Ac3H11_2893 0.18 -0.7 1,203,248 - Ac3H11_2893 0.18 +1.7 1,203,248 - Ac3H11_2893 0.18 -0.9 1,203,697 + Ac3H11_2893 0.70 -1.1 1,203,721 + Ac3H11_2893 0.73 +0.2 1,203,721 + Ac3H11_2893 0.73 -0.6 1,203,721 + Ac3H11_2893 0.73 -3.8 1,203,722 - Ac3H11_2893 0.73 +0.4 1,203,725 + Ac3H11_2893 0.73 -1.7 1,203,725 + Ac3H11_2893 0.73 -0.1 1,203,725 + Ac3H11_2893 0.73 +0.5 1,203,725 + Ac3H11_2893 0.73 -0.2 1,203,726 - Ac3H11_2893 0.73 +2.2 1,203,788 + Ac3H11_2893 0.81 -0.2 1,203,826 + Ac3H11_2893 0.85 -2.1 1,203,826 + Ac3H11_2893 0.85 -2.1 1,203,871 + +0.8 1,203,871 + -0.5 1,203,871 + +0.8 1,203,871 + -0.1 1,203,871 + +0.8 1,203,871 + +0.0 1,203,871 + -1.2 1,203,871 + +1.2 1,203,871 + +0.2 1,203,871 + -0.7 1,203,872 - +3.1 1,203,872 - -0.5 1,203,872 - -1.5 1,203,988 + -1.7 1,204,029 - -0.3 1,204,089 - -2.6 1,204,169 + -0.2 1,204,170 - +0.4 1,204,194 + Ac3H11_2894 0.12 +0.7 1,204,195 - Ac3H11_2894 0.12 -0.7 1,204,195 - Ac3H11_2894 0.12 +1.1 1,204,603 - Ac3H11_2894 0.57 +1.4 1,204,603 - Ac3H11_2894 0.57 -1.7 1,204,665 + Ac3H11_2894 0.64 +0.8 1,204,666 - Ac3H11_2894 0.65 -0.3 1,204,666 - Ac3H11_2894 0.65 +0.4 1,204,813 - Ac3H11_2894 0.81 -1.6 1,204,827 + Ac3H11_2894 0.83 -0.4 1,204,827 + Ac3H11_2894 0.83 -0.0 1,204,827 + Ac3H11_2894 0.83 -0.5 1,204,828 - Ac3H11_2894 0.83 +0.2 1,204,890 + Ac3H11_2894 0.90 -0.4 1,204,890 + Ac3H11_2894 0.90 -0.3 1,204,891 - Ac3H11_2894 0.90 -0.1 1,204,891 - Ac3H11_2894 0.90 -0.6 1,204,891 - Ac3H11_2894 0.90 -1.5 1,204,891 - Ac3H11_2894 0.90 +0.9 1,204,891 - Ac3H11_2894 0.90 +0.4 1,204,899 + +0.2
Or see this region's nucleotide sequence