Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2891

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2890 and Ac3H11_2891 are separated by 3 nucleotidesAc3H11_2891 and Ac3H11_2892 are separated by 25 nucleotidesAc3H11_2892 and Ac3H11_2893 are separated by 76 nucleotides Ac3H11_2890 - Thioredoxin-like protein clustered with PA0057, at 1,201,600 to 1,202,262 _2890 Ac3H11_2891 - hypothetical protein, at 1,202,266 to 1,202,541 _2891 Ac3H11_2892 - Possible membrane protein, at 1,202,567 to 1,203,013 _2892 Ac3H11_2893 - Metallo-beta-lactamase superfamily protein PA0057, at 1,203,090 to 1,203,956 _2893 Position (kb) 1202 1203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.022 kb on - strand, within Ac3H11_2890at 1202.081 kb on + strand, within Ac3H11_2890at 1202.082 kb on - strand, within Ac3H11_2890at 1202.201 kb on + strandat 1202.201 kb on + strandat 1202.202 kb on - strandat 1202.231 kb on + strandat 1202.231 kb on + strandat 1202.231 kb on + strandat 1202.231 kb on + strandat 1202.231 kb on + strandat 1202.231 kb on + strandat 1202.232 kb on - strandat 1202.379 kb on - strand, within Ac3H11_2891at 1202.766 kb on + strand, within Ac3H11_2892at 1202.766 kb on + strand, within Ac3H11_2892at 1202.767 kb on - strand, within Ac3H11_2892at 1202.847 kb on + strand, within Ac3H11_2892at 1202.847 kb on + strand, within Ac3H11_2892at 1202.862 kb on + strand, within Ac3H11_2892at 1202.863 kb on - strand, within Ac3H11_2892at 1202.863 kb on - strand, within Ac3H11_2892at 1202.863 kb on - strand, within Ac3H11_2892at 1202.863 kb on - strand, within Ac3H11_2892at 1203.091 kb on + strandat 1203.092 kb on - strandat 1203.236 kb on - strand, within Ac3H11_2893at 1203.236 kb on - strand, within Ac3H11_2893at 1203.247 kb on + strand, within Ac3H11_2893at 1203.247 kb on + strand, within Ac3H11_2893at 1203.247 kb on + strand, within Ac3H11_2893at 1203.247 kb on + strand, within Ac3H11_2893at 1203.247 kb on + strand, within Ac3H11_2893at 1203.248 kb on - strand, within Ac3H11_2893at 1203.248 kb on - strand, within Ac3H11_2893at 1203.248 kb on - strand, within Ac3H11_2893

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,202,022 - Ac3H11_2890 0.64 -0.8
1,202,081 + Ac3H11_2890 0.73 -1.9
1,202,082 - Ac3H11_2890 0.73 -0.4
1,202,201 + -0.3
1,202,201 + -0.1
1,202,202 - +0.1
1,202,231 + +0.7
1,202,231 + -0.3
1,202,231 + +0.2
1,202,231 + +1.3
1,202,231 + +2.7
1,202,231 + +0.5
1,202,232 - -0.6
1,202,379 - Ac3H11_2891 0.41 -1.1
1,202,766 + Ac3H11_2892 0.45 -0.2
1,202,766 + Ac3H11_2892 0.45 +0.9
1,202,767 - Ac3H11_2892 0.45 +0.3
1,202,847 + Ac3H11_2892 0.63 -2.3
1,202,847 + Ac3H11_2892 0.63 -0.7
1,202,862 + Ac3H11_2892 0.66 +0.5
1,202,863 - Ac3H11_2892 0.66 -2.3
1,202,863 - Ac3H11_2892 0.66 +0.3
1,202,863 - Ac3H11_2892 0.66 -2.1
1,202,863 - Ac3H11_2892 0.66 +0.1
1,203,091 + +0.1
1,203,092 - -0.9
1,203,236 - Ac3H11_2893 0.17 +0.4
1,203,236 - Ac3H11_2893 0.17 -2.1
1,203,247 + Ac3H11_2893 0.18 +0.9
1,203,247 + Ac3H11_2893 0.18 +0.9
1,203,247 + Ac3H11_2893 0.18 -0.3
1,203,247 + Ac3H11_2893 0.18 +0.5
1,203,247 + Ac3H11_2893 0.18 -3.2
1,203,248 - Ac3H11_2893 0.18 -0.7
1,203,248 - Ac3H11_2893 0.18 +1.7
1,203,248 - Ac3H11_2893 0.18 -0.9

Or see this region's nucleotide sequence