Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2890 and Ac3H11_2891 are separated by 3 nucleotides Ac3H11_2891 and Ac3H11_2892 are separated by 25 nucleotides Ac3H11_2892 and Ac3H11_2893 are separated by 76 nucleotides
Ac3H11_2890 - Thioredoxin-like protein clustered with PA0057, at 1,201,600 to 1,202,262
_2890
Ac3H11_2891 - hypothetical protein, at 1,202,266 to 1,202,541
_2891
Ac3H11_2892 - Possible membrane protein, at 1,202,567 to 1,203,013
_2892
Ac3H11_2893 - Metallo-beta-lactamase superfamily protein PA0057, at 1,203,090 to 1,203,956
_2893
Position (kb)
1202
1203 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1202.022 kb on - strand, within Ac3H11_2890 at 1202.081 kb on + strand, within Ac3H11_2890 at 1202.082 kb on - strand, within Ac3H11_2890 at 1202.201 kb on + strand at 1202.201 kb on + strand at 1202.202 kb on - strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.231 kb on + strand at 1202.232 kb on - strand at 1202.379 kb on - strand, within Ac3H11_2891 at 1202.766 kb on + strand, within Ac3H11_2892 at 1202.766 kb on + strand, within Ac3H11_2892 at 1202.767 kb on - strand, within Ac3H11_2892 at 1202.847 kb on + strand, within Ac3H11_2892 at 1202.847 kb on + strand, within Ac3H11_2892 at 1202.862 kb on + strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1202.863 kb on - strand, within Ac3H11_2892 at 1203.091 kb on + strand at 1203.092 kb on - strand at 1203.236 kb on - strand, within Ac3H11_2893 at 1203.236 kb on - strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.247 kb on + strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893 at 1203.248 kb on - strand, within Ac3H11_2893
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,202,022 - Ac3H11_2890 0.64 -0.8 1,202,081 + Ac3H11_2890 0.73 -1.9 1,202,082 - Ac3H11_2890 0.73 -0.4 1,202,201 + -0.3 1,202,201 + -0.1 1,202,202 - +0.1 1,202,231 + +0.7 1,202,231 + -0.3 1,202,231 + +0.2 1,202,231 + +1.3 1,202,231 + +2.7 1,202,231 + +0.5 1,202,232 - -0.6 1,202,379 - Ac3H11_2891 0.41 -1.1 1,202,766 + Ac3H11_2892 0.45 -0.2 1,202,766 + Ac3H11_2892 0.45 +0.9 1,202,767 - Ac3H11_2892 0.45 +0.3 1,202,847 + Ac3H11_2892 0.63 -2.3 1,202,847 + Ac3H11_2892 0.63 -0.7 1,202,862 + Ac3H11_2892 0.66 +0.5 1,202,863 - Ac3H11_2892 0.66 -2.3 1,202,863 - Ac3H11_2892 0.66 +0.3 1,202,863 - Ac3H11_2892 0.66 -2.1 1,202,863 - Ac3H11_2892 0.66 +0.1 1,203,091 + +0.1 1,203,092 - -0.9 1,203,236 - Ac3H11_2893 0.17 +0.4 1,203,236 - Ac3H11_2893 0.17 -2.1 1,203,247 + Ac3H11_2893 0.18 +0.9 1,203,247 + Ac3H11_2893 0.18 +0.9 1,203,247 + Ac3H11_2893 0.18 -0.3 1,203,247 + Ac3H11_2893 0.18 +0.5 1,203,247 + Ac3H11_2893 0.18 -3.2 1,203,248 - Ac3H11_2893 0.18 -0.7 1,203,248 - Ac3H11_2893 0.18 +1.7 1,203,248 - Ac3H11_2893 0.18 -0.9
Or see this region's nucleotide sequence