Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1296

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1294 and Ac3H11_1295 are separated by 108 nucleotidesAc3H11_1295 and Ac3H11_1296 are separated by 20 nucleotidesAc3H11_1296 and Ac3H11_1297 are separated by 281 nucleotides Ac3H11_1294 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 109,833 to 110,744 _1294 Ac3H11_1295 - hypothetical protein, at 110,853 to 111,386 _1295 Ac3H11_1296 - FIG00794195: hypothetical protein, at 111,407 to 112,180 _1296 Ac3H11_1297 - Transcriptional regulator, DeoR family, at 112,462 to 113,487 _1297 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 110.422 kb on - strand, within Ac3H11_1294at 110.484 kb on + strand, within Ac3H11_1294at 110.746 kb on + strandat 110.769 kb on + strandat 110.770 kb on - strandat 111.103 kb on + strand, within Ac3H11_1295at 111.103 kb on + strand, within Ac3H11_1295at 111.104 kb on - strand, within Ac3H11_1295at 111.104 kb on - strand, within Ac3H11_1295at 111.392 kb on + strandat 111.393 kb on - strandat 111.630 kb on + strand, within Ac3H11_1296at 111.631 kb on - strand, within Ac3H11_1296at 111.906 kb on + strand, within Ac3H11_1296at 111.906 kb on + strand, within Ac3H11_1296at 111.907 kb on - strand, within Ac3H11_1296at 112.092 kb on + strand, within Ac3H11_1296at 112.093 kb on - strand, within Ac3H11_1296at 112.093 kb on - strand, within Ac3H11_1296at 112.093 kb on - strand, within Ac3H11_1296at 112.242 kb on - strandat 112.242 kb on - strandat 112.253 kb on + strandat 112.253 kb on + strandat 112.254 kb on - strandat 112.262 kb on + strandat 112.263 kb on - strandat 112.263 kb on - strandat 112.348 kb on + strandat 112.357 kb on + strandat 112.358 kb on - strandat 112.367 kb on - strandat 112.367 kb on - strandat 112.376 kb on - strandat 112.376 kb on - strandat 112.609 kb on + strand, within Ac3H11_1297at 112.609 kb on + strand, within Ac3H11_1297at 112.610 kb on - strand, within Ac3H11_1297at 112.610 kb on - strand, within Ac3H11_1297at 112.610 kb on - strand, within Ac3H11_1297at 112.610 kb on - strand, within Ac3H11_1297at 112.934 kb on - strand, within Ac3H11_1297at 113.005 kb on + strand, within Ac3H11_1297at 113.005 kb on + strand, within Ac3H11_1297at 113.005 kb on + strand, within Ac3H11_1297at 113.092 kb on + strand, within Ac3H11_1297at 113.092 kb on + strand, within Ac3H11_1297at 113.093 kb on - strand, within Ac3H11_1297at 113.093 kb on - strand, within Ac3H11_1297

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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110,422 - Ac3H11_1294 0.65 -2.2
110,484 + Ac3H11_1294 0.71 +0.7
110,746 + -2.5
110,769 + +0.8
110,770 - +3.2
111,103 + Ac3H11_1295 0.47 -2.9
111,103 + Ac3H11_1295 0.47 +0.6
111,104 - Ac3H11_1295 0.47 -1.8
111,104 - Ac3H11_1295 0.47 -0.4
111,392 + -0.1
111,393 - -0.9
111,630 + Ac3H11_1296 0.29 -0.5
111,631 - Ac3H11_1296 0.29 -1.5
111,906 + Ac3H11_1296 0.64 +1.4
111,906 + Ac3H11_1296 0.64 -0.2
111,907 - Ac3H11_1296 0.65 +1.4
112,092 + Ac3H11_1296 0.89 +0.8
112,093 - Ac3H11_1296 0.89 +1.7
112,093 - Ac3H11_1296 0.89 +0.1
112,093 - Ac3H11_1296 0.89 +0.0
112,242 - +1.2
112,242 - +0.6
112,253 + -1.2
112,253 + -0.4
112,254 - +1.2
112,262 + -3.6
112,263 - +0.7
112,263 - +1.1
112,348 + +0.1
112,357 + -0.4
112,358 - +0.3
112,367 - -1.9
112,367 - -1.9
112,376 - +0.9
112,376 - +0.8
112,609 + Ac3H11_1297 0.14 +0.6
112,609 + Ac3H11_1297 0.14 +1.1
112,610 - Ac3H11_1297 0.14 +1.1
112,610 - Ac3H11_1297 0.14 -2.2
112,610 - Ac3H11_1297 0.14 +0.4
112,610 - Ac3H11_1297 0.14 +1.3
112,934 - Ac3H11_1297 0.46 -0.0
113,005 + Ac3H11_1297 0.53 +0.7
113,005 + Ac3H11_1297 0.53 +1.3
113,005 + Ac3H11_1297 0.53 -0.0
113,092 + Ac3H11_1297 0.61 -0.4
113,092 + Ac3H11_1297 0.61 -0.0
113,093 - Ac3H11_1297 0.62 +0.2
113,093 - Ac3H11_1297 0.62 +0.9

Or see this region's nucleotide sequence