Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22910 and AO353_22915 are separated by 216 nucleotides AO353_22915 and AO353_22920 overlap by 4 nucleotides AO353_22920 and AO353_22925 are separated by 190 nucleotides
AO353_22910: AO353_22910 - histidine kinase, at 5,026,746 to 5,028,827
_22910
AO353_22915: AO353_22915 - oxidoreductase, at 5,029,044 to 5,029,790
_22915
AO353_22920: AO353_22920 - GntR family transcriptional regulator, at 5,029,787 to 5,031,196
_22920
AO353_22925: AO353_22925 - (Fe-S)-binding protein, at 5,031,387 to 5,032,799
_22925
Position (kb) 5029
5030
5031
5032 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.796 kb on + strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5028.797 kb on - strand at 5029.000 kb on - strand at 5029.094 kb on + strand at 5029.094 kb on + strand at 5029.094 kb on + strand at 5029.095 kb on - strand at 5029.095 kb on - strand at 5029.095 kb on - strand at 5029.140 kb on + strand, within AO353_22915 at 5029.141 kb on - strand, within AO353_22915 at 5029.503 kb on + strand, within AO353_22915 at 5029.503 kb on + strand, within AO353_22915 at 5029.504 kb on - strand, within AO353_22915 at 5029.504 kb on - strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.614 kb on + strand, within AO353_22915 at 5029.615 kb on - strand at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.615 kb on - strand, within AO353_22915 at 5029.722 kb on - strand at 5029.749 kb on + strand at 5029.749 kb on + strand at 5029.750 kb on - strand at 5029.788 kb on + strand at 5029.811 kb on + strand at 5029.857 kb on + strand at 5029.857 kb on + strand at 5029.857 kb on + strand at 5029.858 kb on - strand at 5029.870 kb on + strand at 5029.995 kb on + strand, within AO353_22920 at 5029.996 kb on - strand, within AO353_22920 at 5030.038 kb on - strand, within AO353_22920 at 5030.334 kb on + strand at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.335 kb on - strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.586 kb on + strand, within AO353_22920 at 5030.587 kb on - strand at 5030.587 kb on - strand, within AO353_22920 at 5030.587 kb on - strand, within AO353_22920 at 5030.718 kb on + strand, within AO353_22920 at 5030.718 kb on + strand at 5030.719 kb on - strand, within AO353_22920 at 5030.719 kb on - strand, within AO353_22920 at 5031.007 kb on - strand, within AO353_22920 at 5031.054 kb on + strand, within AO353_22920 at 5031.054 kb on + strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.055 kb on - strand, within AO353_22920 at 5031.057 kb on + strand at 5031.057 kb on + strand at 5031.057 kb on + strand at 5031.091 kb on - strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.198 kb on + strand at 5031.199 kb on - strand at 5031.299 kb on - strand at 5031.299 kb on - strand at 5031.649 kb on + strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.650 kb on - strand, within AO353_22925 at 5031.844 kb on + strand, within AO353_22925 at 5031.844 kb on + strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.845 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5031.903 kb on - strand, within AO353_22925 at 5032.120 kb on + strand, within AO353_22925 at 5032.121 kb on - strand, within AO353_22925 at 5032.121 kb on - strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.130 kb on + strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.131 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925 at 5032.172 kb on - strand, within AO353_22925
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,028,796 + +0.1 5,028,796 + -0.1 5,028,796 + +0.5 5,028,796 + +0.6 5,028,797 - -0.5 5,028,797 - +0.1 5,028,797 - -1.2 5,028,797 - +2.8 5,028,797 - -0.2 5,028,797 - -0.5 5,029,000 - -1.7 5,029,094 + +1.4 5,029,094 + +2.0 5,029,094 + +0.1 5,029,095 - +2.0 5,029,095 - -1.1 5,029,095 - +0.0 5,029,140 + AO353_22915 0.13 +0.7 5,029,141 - AO353_22915 0.13 +0.0 5,029,503 + AO353_22915 0.61 +1.0 5,029,503 + AO353_22915 0.61 -0.3 5,029,504 - AO353_22915 0.62 +1.5 5,029,504 - AO353_22915 0.62 +0.5 5,029,614 + AO353_22915 0.76 -0.4 5,029,614 + AO353_22915 0.76 -0.0 5,029,614 + AO353_22915 0.76 -1.1 5,029,614 + AO353_22915 0.76 +2.8 5,029,615 - -0.1 5,029,615 - AO353_22915 0.76 -0.2 5,029,615 - AO353_22915 0.76 +1.5 5,029,615 - AO353_22915 0.76 -0.9 5,029,615 - AO353_22915 0.76 +1.0 5,029,615 - AO353_22915 0.76 -1.1 5,029,722 - +1.2 5,029,749 + -1.9 5,029,749 + -0.1 5,029,750 - +1.3 5,029,788 + -1.5 5,029,811 + -1.7 5,029,857 + -0.1 5,029,857 + -0.9 5,029,857 + -0.1 5,029,858 - +0.5 5,029,870 + -1.0 5,029,995 + AO353_22920 0.15 -0.9 5,029,996 - AO353_22920 0.15 +1.5 5,030,038 - AO353_22920 0.18 -1.3 5,030,334 + -0.5 5,030,335 - AO353_22920 0.39 -1.0 5,030,335 - AO353_22920 0.39 -0.5 5,030,335 - AO353_22920 0.39 -2.5 5,030,335 - AO353_22920 0.39 -1.5 5,030,586 + AO353_22920 0.57 -0.0 5,030,586 + AO353_22920 0.57 -1.3 5,030,586 + AO353_22920 0.57 -0.8 5,030,587 - +1.5 5,030,587 - AO353_22920 0.57 -1.0 5,030,587 - AO353_22920 0.57 -0.1 5,030,718 + AO353_22920 0.66 -1.1 5,030,718 + -0.5 5,030,719 - AO353_22920 0.66 -2.1 5,030,719 - AO353_22920 0.66 -0.5 5,031,007 - AO353_22920 0.87 -0.5 5,031,054 + AO353_22920 0.90 -0.4 5,031,054 + AO353_22920 0.90 -0.5 5,031,055 - AO353_22920 0.90 +0.8 5,031,055 - AO353_22920 0.90 +0.9 5,031,055 - AO353_22920 0.90 -2.1 5,031,055 - AO353_22920 0.90 +1.8 5,031,057 + -0.1 5,031,057 + +0.2 5,031,057 + -1.7 5,031,091 - -1.1 5,031,198 + -1.0 5,031,198 + +0.0 5,031,198 + -1.9 5,031,198 + -0.8 5,031,199 - +0.5 5,031,299 - +0.8 5,031,299 - +0.0 5,031,649 + AO353_22925 0.19 -0.5 5,031,650 - AO353_22925 0.19 +1.5 5,031,650 - AO353_22925 0.19 +1.5 5,031,650 - AO353_22925 0.19 -0.9 5,031,650 - AO353_22925 0.19 -0.1 5,031,844 + AO353_22925 0.32 +1.5 5,031,844 + AO353_22925 0.32 -2.5 5,031,845 - AO353_22925 0.32 -1.5 5,031,845 - AO353_22925 0.32 -0.3 5,031,845 - AO353_22925 0.32 -2.3 5,031,845 - AO353_22925 0.32 -0.2 5,031,903 - AO353_22925 0.37 +0.0 5,031,903 - AO353_22925 0.37 +0.2 5,031,903 - AO353_22925 0.37 +0.5 5,031,903 - AO353_22925 0.37 +1.8 5,031,903 - AO353_22925 0.37 -0.5 5,031,903 - AO353_22925 0.37 -1.1 5,032,120 + AO353_22925 0.52 +0.3 5,032,121 - AO353_22925 0.52 -0.9 5,032,121 - AO353_22925 0.52 -1.3 5,032,130 + AO353_22925 0.53 -0.9 5,032,130 + AO353_22925 0.53 -0.1 5,032,130 + AO353_22925 0.53 -1.0 5,032,130 + AO353_22925 0.53 +1.5 5,032,130 + AO353_22925 0.53 -0.5 5,032,130 + AO353_22925 0.53 +0.3 5,032,130 + AO353_22925 0.53 -1.9 5,032,130 + AO353_22925 0.53 -2.3 5,032,130 + AO353_22925 0.53 -0.5 5,032,130 + AO353_22925 0.53 +0.2 5,032,130 + AO353_22925 0.53 -0.9 5,032,130 + AO353_22925 0.53 +1.0 5,032,130 + AO353_22925 0.53 -0.3 5,032,130 + AO353_22925 0.53 -2.1 5,032,130 + AO353_22925 0.53 -0.7 5,032,130 + AO353_22925 0.53 +1.0 5,032,130 + AO353_22925 0.53 +0.1 5,032,130 + AO353_22925 0.53 +1.5 5,032,130 + AO353_22925 0.53 -3.4 5,032,130 + AO353_22925 0.53 -1.5 5,032,130 + AO353_22925 0.53 +0.7 5,032,130 + AO353_22925 0.53 -0.3 5,032,130 + AO353_22925 0.53 -0.5 5,032,130 + AO353_22925 0.53 +0.9 5,032,130 + AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 +1.5 5,032,131 - AO353_22925 0.53 +1.0 5,032,131 - AO353_22925 0.53 +0.5 5,032,131 - AO353_22925 0.53 +0.1 5,032,131 - AO353_22925 0.53 +1.2 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -1.3 5,032,131 - AO353_22925 0.53 +0.0 5,032,131 - AO353_22925 0.53 -0.4 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -1.2 5,032,131 - AO353_22925 0.53 -0.1 5,032,131 - AO353_22925 0.53 +0.0 5,032,131 - AO353_22925 0.53 -3.0 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -0.5 5,032,131 - AO353_22925 0.53 -1.0 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 -1.1 5,032,131 - AO353_22925 0.53 +0.1 5,032,131 - AO353_22925 0.53 +0.5 5,032,131 - AO353_22925 0.53 -0.9 5,032,131 - AO353_22925 0.53 -3.4 5,032,131 - AO353_22925 0.53 -0.4 5,032,131 - AO353_22925 0.53 -0.3 5,032,131 - AO353_22925 0.53 -1.5 5,032,172 - AO353_22925 0.56 +0.2 5,032,172 - AO353_22925 0.56 -2.1 5,032,172 - AO353_22925 0.56 +1.3
Or see this region's nucleotide sequence