Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22700

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22695 and AO353_22700 are separated by 47 nucleotidesAO353_22700 and AO353_22705 overlap by 1 nucleotidesAO353_22705 and AO353_22710 are separated by 7 nucleotides AO353_22695: AO353_22695 - LysR family transcriptional regulator, at 4,969,703 to 4,970,620 _22695 AO353_22700: AO353_22700 - LexA family transcriptional regulator, at 4,970,668 to 4,971,285 _22700 AO353_22705: AO353_22705 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,971,285 to 4,971,902 _22705 AO353_22710: AO353_22710 - DNA repair nucleotidyltransferase, at 4,971,910 to 4,973,325 _22710 Position (kb) 4970 4971 4972Strain fitness (log2 ratio) -2 -1 0 1 2at 4969.872 kb on + strand, within AO353_22695at 4969.872 kb on + strand, within AO353_22695at 4969.872 kb on + strand, within AO353_22695at 4969.895 kb on + strand, within AO353_22695at 4969.895 kb on + strand, within AO353_22695at 4970.214 kb on - strand, within AO353_22695at 4970.276 kb on + strand, within AO353_22695at 4970.277 kb on - strand, within AO353_22695at 4970.277 kb on - strand, within AO353_22695at 4970.277 kb on - strand, within AO353_22695at 4970.277 kb on - strand, within AO353_22695at 4970.277 kb on - strand, within AO353_22695at 4970.378 kb on + strand, within AO353_22695at 4970.379 kb on - strand, within AO353_22695at 4970.379 kb on - strand, within AO353_22695at 4970.379 kb on - strand, within AO353_22695at 4970.490 kb on - strand, within AO353_22695at 4971.019 kb on + strand, within AO353_22700at 4971.208 kb on + strand, within AO353_22700at 4971.209 kb on - strand, within AO353_22700at 4971.209 kb on - strand, within AO353_22700at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.544 kb on - strand, within AO353_22705at 4971.779 kb on + strand, within AO353_22705at 4971.835 kb on + strand, within AO353_22705at 4971.924 kb on + strandat 4971.924 kb on + strandat 4971.925 kb on - strandat 4971.925 kb on - strandat 4971.925 kb on - strandat 4972.123 kb on + strand, within AO353_22710at 4972.123 kb on + strand, within AO353_22710at 4972.123 kb on + strand, within AO353_22710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,969,872 + AO353_22695 0.18 +0.5
4,969,872 + AO353_22695 0.18 +1.5
4,969,872 + AO353_22695 0.18 +0.7
4,969,895 + AO353_22695 0.21 -2.2
4,969,895 + AO353_22695 0.21 +1.9
4,970,214 - AO353_22695 0.56 -1.0
4,970,276 + AO353_22695 0.62 +1.2
4,970,277 - AO353_22695 0.63 +0.0
4,970,277 - AO353_22695 0.63 +1.2
4,970,277 - AO353_22695 0.63 +0.5
4,970,277 - AO353_22695 0.63 -0.5
4,970,277 - AO353_22695 0.63 +0.9
4,970,378 + AO353_22695 0.74 +1.0
4,970,379 - AO353_22695 0.74 +1.3
4,970,379 - AO353_22695 0.74 -0.1
4,970,379 - AO353_22695 0.74 +0.5
4,970,490 - AO353_22695 0.86 +0.2
4,971,019 + AO353_22700 0.57 -0.5
4,971,208 + AO353_22700 0.87 -1.9
4,971,209 - AO353_22700 0.88 -0.9
4,971,209 - AO353_22700 0.88 +0.2
4,971,543 + AO353_22705 0.42 +0.0
4,971,543 + AO353_22705 0.42 +0.5
4,971,543 + AO353_22705 0.42 +0.5
4,971,543 + AO353_22705 0.42 +1.7
4,971,543 + AO353_22705 0.42 -0.1
4,971,543 + AO353_22705 0.42 +1.7
4,971,543 + AO353_22705 0.42 -0.4
4,971,544 - AO353_22705 0.42 +0.5
4,971,779 + AO353_22705 0.80 -0.1
4,971,835 + AO353_22705 0.89 +1.3
4,971,924 + -1.1
4,971,924 + +1.2
4,971,925 - -1.0
4,971,925 - -0.7
4,971,925 - -1.9
4,972,123 + AO353_22710 0.15 -1.0
4,972,123 + AO353_22710 0.15 -1.2
4,972,123 + AO353_22710 0.15 -0.1

Or see this region's nucleotide sequence