Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19680 and AO353_19685 are separated by 287 nucleotides AO353_19685 and AO353_19690 are separated by 107 nucleotides
AO353_19680: AO353_19680 - mechanosensitive ion channel protein MscS, at 4,315,465 to 4,316,901
_19680
AO353_19685: AO353_19685 - alkylhydroperoxidase, at 4,317,189 to 4,317,629
_19685
AO353_19690: AO353_19690 - hypothetical protein, at 4,317,737 to 4,321,420
_19690
Position (kb)
4317
4318 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4316.282 kb on - strand, within AO353_19680 at 4316.300 kb on + strand, within AO353_19680 at 4316.300 kb on + strand, within AO353_19680 at 4316.454 kb on + strand, within AO353_19680 at 4316.454 kb on + strand, within AO353_19680 at 4316.746 kb on + strand, within AO353_19680 at 4316.747 kb on - strand, within AO353_19680 at 4316.900 kb on - strand at 4316.908 kb on - strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.996 kb on + strand at 4316.997 kb on - strand at 4316.997 kb on - strand at 4316.997 kb on - strand at 4316.997 kb on - strand at 4316.997 kb on - strand at 4316.999 kb on + strand at 4316.999 kb on + strand at 4316.999 kb on + strand at 4316.999 kb on + strand at 4317.000 kb on - strand at 4317.000 kb on - strand at 4317.000 kb on - strand at 4317.103 kb on - strand at 4317.126 kb on + strand at 4317.127 kb on - strand at 4317.130 kb on + strand at 4317.130 kb on + strand at 4317.130 kb on + strand at 4317.130 kb on + strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.131 kb on - strand at 4317.156 kb on + strand at 4317.156 kb on + strand at 4317.156 kb on + strand at 4317.157 kb on - strand at 4317.157 kb on - strand at 4317.159 kb on - strand at 4317.176 kb on + strand at 4317.176 kb on + strand at 4317.176 kb on + strand at 4317.176 kb on + strand at 4317.396 kb on + strand, within AO353_19685 at 4317.396 kb on + strand, within AO353_19685 at 4317.396 kb on + strand, within AO353_19685 at 4317.397 kb on - strand, within AO353_19685 at 4317.397 kb on - strand, within AO353_19685 at 4317.511 kb on - strand, within AO353_19685 at 4317.582 kb on - strand, within AO353_19685 at 4317.627 kb on + strand at 4317.628 kb on - strand at 4317.628 kb on - strand at 4317.693 kb on + strand at 4317.693 kb on + strand at 4317.693 kb on + strand at 4317.693 kb on + strand at 4317.693 kb on + strand at 4317.693 kb on + strand at 4317.694 kb on - strand at 4317.759 kb on + strand at 4317.759 kb on + strand at 4317.759 kb on + strand at 4317.759 kb on + strand at 4317.759 kb on + strand at 4317.839 kb on + strand at 4317.840 kb on - strand at 4317.840 kb on - strand at 4317.840 kb on - strand at 4317.840 kb on - strand at 4317.840 kb on - strand at 4317.908 kb on + strand at 4317.908 kb on + strand at 4317.908 kb on + strand at 4317.908 kb on + strand at 4317.908 kb on + strand at 4317.908 kb on + strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.909 kb on - strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.974 kb on + strand at 4317.975 kb on - strand at 4317.975 kb on - strand at 4317.975 kb on - strand at 4317.975 kb on - strand at 4317.975 kb on - strand at 4317.975 kb on - strand at 4317.984 kb on + strand at 4317.984 kb on + strand at 4317.984 kb on + strand at 4317.984 kb on + strand at 4317.985 kb on - strand at 4318.031 kb on + strand at 4318.031 kb on + strand at 4318.031 kb on + strand at 4318.031 kb on + strand at 4318.032 kb on - strand at 4318.032 kb on - strand at 4318.065 kb on + strand at 4318.065 kb on + strand at 4318.065 kb on + strand at 4318.066 kb on - strand at 4318.066 kb on - strand at 4318.066 kb on - strand at 4318.066 kb on - strand at 4318.066 kb on - strand at 4318.310 kb on + strand, within AO353_19690 at 4318.310 kb on + strand, within AO353_19690 at 4318.311 kb on - strand, within AO353_19690 at 4318.331 kb on + strand, within AO353_19690 at 4318.331 kb on + strand, within AO353_19690 at 4318.332 kb on - strand, within AO353_19690 at 4318.332 kb on - strand, within AO353_19690 at 4318.332 kb on - strand, within AO353_19690 at 4318.332 kb on - strand, within AO353_19690 at 4318.332 kb on - strand, within AO353_19690 at 4318.343 kb on + strand, within AO353_19690 at 4318.343 kb on + strand, within AO353_19690 at 4318.343 kb on + strand, within AO353_19690 at 4318.343 kb on + strand, within AO353_19690 at 4318.343 kb on + strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.344 kb on - strand, within AO353_19690 at 4318.345 kb on + strand, within AO353_19690 at 4318.345 kb on + strand, within AO353_19690 at 4318.345 kb on + strand, within AO353_19690 at 4318.345 kb on + strand, within AO353_19690 at 4318.346 kb on - strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.418 kb on + strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand, within AO353_19690 at 4318.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,316,282 - AO353_19680 0.57 +0.2 4,316,300 + AO353_19680 0.58 -0.2 4,316,300 + AO353_19680 0.58 -0.3 4,316,454 + AO353_19680 0.69 -1.1 4,316,454 + AO353_19680 0.69 +0.7 4,316,746 + AO353_19680 0.89 -0.9 4,316,747 - AO353_19680 0.89 +0.7 4,316,900 - -0.6 4,316,908 - -1.1 4,316,996 + +0.4 4,316,996 + -1.1 4,316,996 + +1.7 4,316,996 + -0.1 4,316,996 + +0.4 4,316,996 + -0.1 4,316,996 + -2.3 4,316,997 - -0.9 4,316,997 - +0.1 4,316,997 - +0.7 4,316,997 - -1.1 4,316,997 - +0.7 4,316,999 + -1.5 4,316,999 + +0.4 4,316,999 + -0.1 4,316,999 + +0.7 4,317,000 - -0.4 4,317,000 - +1.2 4,317,000 - +0.3 4,317,103 - +3.0 4,317,126 + -0.3 4,317,127 - -1.7 4,317,130 + -0.5 4,317,130 + +0.7 4,317,130 + +0.9 4,317,130 + -0.3 4,317,131 - +0.7 4,317,131 - -0.1 4,317,131 - +0.9 4,317,131 - -0.7 4,317,131 - -1.3 4,317,131 - +1.1 4,317,131 - -0.9 4,317,156 + +0.1 4,317,156 + -0.3 4,317,156 + +0.1 4,317,157 - +1.1 4,317,157 - -0.3 4,317,159 - -1.5 4,317,176 + -0.9 4,317,176 + -0.9 4,317,176 + -0.2 4,317,176 + +0.3 4,317,396 + AO353_19685 0.47 -1.7 4,317,396 + AO353_19685 0.47 -1.3 4,317,396 + AO353_19685 0.47 -0.6 4,317,397 - AO353_19685 0.47 +0.3 4,317,397 - AO353_19685 0.47 +3.3 4,317,511 - AO353_19685 0.73 -0.9 4,317,582 - AO353_19685 0.89 +0.7 4,317,627 + -1.0 4,317,628 - +0.3 4,317,628 - -0.2 4,317,693 + -0.7 4,317,693 + -1.4 4,317,693 + +0.9 4,317,693 + -0.1 4,317,693 + +2.3 4,317,693 + -1.3 4,317,694 - -0.1 4,317,759 + -1.1 4,317,759 + -0.1 4,317,759 + +1.0 4,317,759 + +0.7 4,317,759 + +2.4 4,317,839 + +0.1 4,317,840 - -0.9 4,317,840 - -0.1 4,317,840 - +1.3 4,317,840 - -0.6 4,317,840 - -0.3 4,317,908 + -0.3 4,317,908 + -0.7 4,317,908 + -0.3 4,317,908 + +0.4 4,317,908 + +2.8 4,317,908 + -0.1 4,317,909 - +1.0 4,317,909 - +0.7 4,317,909 - -0.9 4,317,909 - -0.4 4,317,909 - +1.2 4,317,909 - -0.9 4,317,909 - -0.9 4,317,909 - +0.3 4,317,909 - -0.1 4,317,909 - -0.0 4,317,909 - +0.5 4,317,909 - -1.4 4,317,909 - +0.5 4,317,974 + +2.3 4,317,974 + -1.7 4,317,974 + +0.4 4,317,974 + +0.9 4,317,974 + -0.1 4,317,974 + -1.7 4,317,974 + +0.5 4,317,975 - +2.7 4,317,975 - -0.1 4,317,975 - -0.9 4,317,975 - -1.1 4,317,975 - -0.3 4,317,975 - +0.1 4,317,984 + -1.4 4,317,984 + +0.7 4,317,984 + +0.8 4,317,984 + -0.1 4,317,985 - -0.3 4,318,031 + +0.1 4,318,031 + -1.8 4,318,031 + +0.3 4,318,031 + +0.3 4,318,032 - -0.9 4,318,032 - -1.7 4,318,065 + +1.7 4,318,065 + +1.4 4,318,065 + -0.8 4,318,066 - -0.6 4,318,066 - +1.4 4,318,066 - +2.3 4,318,066 - +0.4 4,318,066 - -2.1 4,318,310 + AO353_19690 0.16 -2.8 4,318,310 + AO353_19690 0.16 +0.9 4,318,311 - AO353_19690 0.16 -0.3 4,318,331 + AO353_19690 0.16 -1.3 4,318,331 + AO353_19690 0.16 -0.0 4,318,332 - AO353_19690 0.16 -0.5 4,318,332 - AO353_19690 0.16 +1.7 4,318,332 - AO353_19690 0.16 -0.6 4,318,332 - AO353_19690 0.16 +0.3 4,318,332 - AO353_19690 0.16 -0.1 4,318,343 + AO353_19690 0.16 -0.3 4,318,343 + AO353_19690 0.16 +0.5 4,318,343 + AO353_19690 0.16 +0.9 4,318,343 + AO353_19690 0.16 +1.4 4,318,343 + AO353_19690 0.16 -0.3 4,318,344 - AO353_19690 0.16 +0.4 4,318,344 - AO353_19690 0.16 -0.3 4,318,344 - AO353_19690 0.16 +0.5 4,318,344 - AO353_19690 0.16 -1.1 4,318,344 - AO353_19690 0.16 +0.4 4,318,344 - AO353_19690 0.16 +0.5 4,318,344 - AO353_19690 0.16 -2.3 4,318,344 - AO353_19690 0.16 +1.7 4,318,344 - AO353_19690 0.16 +0.7 4,318,345 + AO353_19690 0.17 +1.5 4,318,345 + AO353_19690 0.17 +0.2 4,318,345 + AO353_19690 0.17 -2.1 4,318,345 + AO353_19690 0.17 +0.8 4,318,346 - AO353_19690 0.17 +0.8 4,318,418 + AO353_19690 0.18 +1.4 4,318,418 + AO353_19690 0.18 -0.7 4,318,418 + AO353_19690 0.18 +0.8 4,318,418 + AO353_19690 0.18 -1.9 4,318,418 + AO353_19690 0.18 +0.3 4,318,418 + AO353_19690 0.18 -1.1 4,318,419 - AO353_19690 0.19 +1.4 4,318,419 - AO353_19690 0.19 -0.9 4,318,419 - AO353_19690 0.19 -1.9 4,318,419 - AO353_19690 0.19 +0.2 4,318,419 - AO353_19690 0.19 -1.7 4,318,419 - AO353_19690 0.19 +0.5 4,318,419 - AO353_19690 0.19 +0.2 4,318,419 - AO353_19690 0.19 +1.5 4,318,419 - AO353_19690 0.19 -0.7 4,318,419 - -0.3
Or see this region's nucleotide sequence