Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18875 and AO353_18880 overlap by 4 nucleotides AO353_18880 and AO353_18885 overlap by 4 nucleotides AO353_18885 and AO353_18890 overlap by 8 nucleotides AO353_18890 and AO353_18895 are separated by 13 nucleotides AO353_18895 and AO353_18900 are separated by 125 nucleotides
AO353_18875: AO353_18875 - cytochrome C biogenesis protein CcmF, at 4,146,223 to 4,148,211
_18875
AO353_18880: AO353_18880 - thiol:disulfide interchange protein, at 4,148,208 to 4,148,744
_18880
AO353_18885: AO353_18885 - cytochrome C, at 4,148,741 to 4,149,214
_18885
AO353_18890: AO353_18890 - cytochrome C, at 4,149,207 to 4,150,415
_18890
AO353_18895: AO353_18895 - hypothetical protein, at 4,150,429 to 4,150,830
_18895
AO353_18900: AO353_18900 - GntR family transcriptional regulator, at 4,150,956 to 4,151,609
_18900
Position (kb)
4149
4150
4151 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4148.487 kb on + strand, within AO353_18880 at 4149.666 kb on + strand, within AO353_18890 at 4149.681 kb on - strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.860 kb on + strand, within AO353_18890 at 4150.037 kb on + strand, within AO353_18890 at 4150.038 kb on - strand, within AO353_18890 at 4150.126 kb on + strand, within AO353_18890 at 4150.126 kb on + strand, within AO353_18890 at 4150.126 kb on + strand, within AO353_18890 at 4150.127 kb on - strand, within AO353_18890 at 4150.413 kb on + strand at 4150.414 kb on - strand at 4150.428 kb on + strand at 4150.475 kb on + strand, within AO353_18895 at 4150.475 kb on + strand, within AO353_18895 at 4150.675 kb on + strand, within AO353_18895 at 4150.676 kb on - strand, within AO353_18895 at 4150.676 kb on - strand, within AO353_18895 at 4150.676 kb on - strand, within AO353_18895 at 4150.676 kb on - strand, within AO353_18895 at 4150.676 kb on - strand, within AO353_18895 at 4150.705 kb on + strand, within AO353_18895 at 4150.706 kb on - strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.720 kb on + strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.721 kb on - strand, within AO353_18895 at 4150.723 kb on + strand, within AO353_18895 at 4150.723 kb on + strand, within AO353_18895 at 4150.724 kb on - strand, within AO353_18895 at 4150.796 kb on + strand at 4150.819 kb on + strand at 4150.819 kb on + strand at 4150.819 kb on + strand at 4150.819 kb on + strand at 4150.819 kb on + strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.820 kb on - strand at 4150.846 kb on + strand at 4150.847 kb on - strand at 4150.847 kb on - strand at 4150.905 kb on + strand at 4150.906 kb on - strand at 4150.912 kb on + strand at 4150.912 kb on + strand at 4150.912 kb on + strand at 4150.955 kb on + strand at 4150.955 kb on + strand at 4150.955 kb on + strand at 4150.955 kb on + strand at 4150.955 kb on + strand at 4150.955 kb on + strand at 4150.956 kb on - strand at 4150.956 kb on - strand at 4150.956 kb on - strand at 4150.956 kb on - strand at 4150.956 kb on - strand at 4150.956 kb on - strand at 4151.070 kb on + strand, within AO353_18900 at 4151.070 kb on + strand, within AO353_18900 at 4151.070 kb on + strand, within AO353_18900 at 4151.070 kb on + strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.071 kb on - strand, within AO353_18900 at 4151.073 kb on - strand, within AO353_18900 at 4151.087 kb on + strand, within AO353_18900 at 4151.087 kb on + strand, within AO353_18900 at 4151.087 kb on + strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.088 kb on - strand, within AO353_18900 at 4151.136 kb on + strand, within AO353_18900 at 4151.136 kb on + strand, within AO353_18900 at 4151.136 kb on + strand, within AO353_18900 at 4151.137 kb on - strand, within AO353_18900 at 4151.137 kb on - strand, within AO353_18900 at 4151.137 kb on - strand, within AO353_18900 at 4151.148 kb on - strand, within AO353_18900 at 4151.222 kb on - strand, within AO353_18900 at 4151.222 kb on - strand, within AO353_18900 at 4151.256 kb on + strand, within AO353_18900 at 4151.257 kb on - strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.360 kb on + strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.361 kb on - strand, within AO353_18900 at 4151.403 kb on - strand, within AO353_18900
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,148,487 + AO353_18880 0.52 -2.7 4,149,666 + AO353_18890 0.38 -0.9 4,149,681 - AO353_18890 0.39 +1.6 4,149,684 + AO353_18890 0.39 -1.1 4,149,684 + AO353_18890 0.39 +0.7 4,149,684 + AO353_18890 0.39 -1.3 4,149,684 + AO353_18890 0.39 -2.3 4,149,684 + AO353_18890 0.39 -0.9 4,149,685 - AO353_18890 0.40 +1.3 4,149,685 - AO353_18890 0.40 +0.7 4,149,685 - AO353_18890 0.40 -0.9 4,149,685 - +0.7 4,149,685 - AO353_18890 0.40 +0.1 4,149,685 - AO353_18890 0.40 -1.5 4,149,685 - AO353_18890 0.40 -1.0 4,149,685 - AO353_18890 0.40 -0.9 4,149,860 + AO353_18890 0.54 +0.3 4,150,037 + AO353_18890 0.69 +0.1 4,150,038 - AO353_18890 0.69 -0.6 4,150,126 + AO353_18890 0.76 -0.6 4,150,126 + AO353_18890 0.76 +0.7 4,150,126 + AO353_18890 0.76 +0.1 4,150,127 - AO353_18890 0.76 -0.0 4,150,413 + +0.1 4,150,414 - +0.7 4,150,428 + -0.3 4,150,475 + AO353_18895 0.11 -0.3 4,150,475 + AO353_18895 0.11 -0.4 4,150,675 + AO353_18895 0.61 +0.7 4,150,676 - AO353_18895 0.61 -3.3 4,150,676 - AO353_18895 0.61 -0.9 4,150,676 - AO353_18895 0.61 -1.3 4,150,676 - AO353_18895 0.61 -2.4 4,150,676 - AO353_18895 0.61 +1.0 4,150,705 + AO353_18895 0.69 -0.3 4,150,706 - AO353_18895 0.69 +0.1 4,150,720 + AO353_18895 0.72 +0.6 4,150,720 + AO353_18895 0.72 +2.3 4,150,720 + AO353_18895 0.72 +0.5 4,150,720 + AO353_18895 0.72 +0.7 4,150,720 + AO353_18895 0.72 -0.9 4,150,720 + AO353_18895 0.72 +1.1 4,150,720 + AO353_18895 0.72 -0.9 4,150,721 - AO353_18895 0.73 +1.7 4,150,721 - AO353_18895 0.73 -0.6 4,150,721 - AO353_18895 0.73 +0.4 4,150,721 - AO353_18895 0.73 +0.2 4,150,721 - AO353_18895 0.73 -0.3 4,150,721 - AO353_18895 0.73 +0.3 4,150,721 - AO353_18895 0.73 +1.1 4,150,721 - AO353_18895 0.73 +0.1 4,150,721 - AO353_18895 0.73 -1.9 4,150,721 - AO353_18895 0.73 +0.5 4,150,721 - AO353_18895 0.73 +1.1 4,150,721 - AO353_18895 0.73 -1.2 4,150,721 - AO353_18895 0.73 -0.9 4,150,723 + AO353_18895 0.73 -1.4 4,150,723 + AO353_18895 0.73 +1.0 4,150,724 - AO353_18895 0.73 -0.9 4,150,796 + +1.1 4,150,819 + +0.1 4,150,819 + +0.7 4,150,819 + +0.1 4,150,819 + -1.0 4,150,819 + +0.7 4,150,820 - -0.1 4,150,820 - -0.1 4,150,820 - -0.2 4,150,820 - -0.3 4,150,820 - +0.7 4,150,820 - -0.3 4,150,820 - -0.4 4,150,820 - +0.1 4,150,820 - +1.3 4,150,820 - +2.5 4,150,846 + +0.5 4,150,847 - +1.1 4,150,847 - -1.6 4,150,905 + +0.2 4,150,906 - -0.9 4,150,912 + +0.1 4,150,912 + -0.0 4,150,912 + -0.0 4,150,955 + -0.9 4,150,955 + +1.1 4,150,955 + -1.9 4,150,955 + +1.1 4,150,955 + +2.0 4,150,955 + +0.7 4,150,956 - -0.3 4,150,956 - -0.3 4,150,956 - -1.3 4,150,956 - +0.1 4,150,956 - -0.1 4,150,956 - +2.3 4,151,070 + AO353_18900 0.17 -0.3 4,151,070 + AO353_18900 0.17 -0.9 4,151,070 + AO353_18900 0.17 +0.7 4,151,070 + AO353_18900 0.17 +0.1 4,151,071 - AO353_18900 0.18 +0.7 4,151,071 - AO353_18900 0.18 +1.1 4,151,071 - AO353_18900 0.18 -1.3 4,151,071 - AO353_18900 0.18 -0.3 4,151,071 - AO353_18900 0.18 +0.4 4,151,071 - AO353_18900 0.18 +0.7 4,151,071 - AO353_18900 0.18 -0.5 4,151,071 - AO353_18900 0.18 -1.0 4,151,073 - AO353_18900 0.18 +1.4 4,151,087 + AO353_18900 0.20 -0.6 4,151,087 + AO353_18900 0.20 -0.6 4,151,087 + AO353_18900 0.20 -0.0 4,151,088 - AO353_18900 0.20 +1.1 4,151,088 - AO353_18900 0.20 -0.3 4,151,088 - AO353_18900 0.20 -0.9 4,151,088 - AO353_18900 0.20 -0.9 4,151,088 - AO353_18900 0.20 -1.1 4,151,088 - AO353_18900 0.20 +0.3 4,151,088 - AO353_18900 0.20 +0.4 4,151,136 + AO353_18900 0.28 +0.2 4,151,136 + AO353_18900 0.28 +1.4 4,151,136 + AO353_18900 0.28 +1.1 4,151,137 - AO353_18900 0.28 +1.1 4,151,137 - AO353_18900 0.28 +0.6 4,151,137 - AO353_18900 0.28 -0.5 4,151,148 - AO353_18900 0.29 +1.1 4,151,222 - AO353_18900 0.41 +1.9 4,151,222 - AO353_18900 0.41 +0.6 4,151,256 + AO353_18900 0.46 -0.5 4,151,257 - AO353_18900 0.46 -1.5 4,151,360 + AO353_18900 0.62 -0.6 4,151,360 + AO353_18900 0.62 +0.2 4,151,360 + AO353_18900 0.62 -0.8 4,151,360 + AO353_18900 0.62 -0.1 4,151,360 + AO353_18900 0.62 -0.4 4,151,360 + AO353_18900 0.62 +0.7 4,151,360 + AO353_18900 0.62 +0.0 4,151,360 + AO353_18900 0.62 -0.3 4,151,360 + AO353_18900 0.62 +0.1 4,151,360 + AO353_18900 0.62 -0.1 4,151,361 - AO353_18900 0.62 +1.9 4,151,361 - AO353_18900 0.62 -2.3 4,151,361 - AO353_18900 0.62 +0.9 4,151,361 - AO353_18900 0.62 -0.3 4,151,361 - AO353_18900 0.62 +0.1 4,151,361 - AO353_18900 0.62 -0.7 4,151,361 - AO353_18900 0.62 -2.4 4,151,361 - AO353_18900 0.62 -0.5 4,151,361 - AO353_18900 0.62 +0.4 4,151,403 - AO353_18900 0.68 -0.3
Or see this region's nucleotide sequence