Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15180 and AO353_15185 are separated by 90 nucleotides AO353_15185 and AO353_15190 are separated by 50 nucleotides
AO353_15180: AO353_15180 - tryptophan--tRNA ligase, at 3,354,990 to 3,356,345
_15180
AO353_15185: AO353_15185 - ATPase, at 3,356,436 to 3,357,530
_15185
AO353_15190: AO353_15190 - asparaginase, at 3,357,581 to 3,358,576
_15190
Position (kb)
3356
3357
3358 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3356.344 kb on - strand at 3356.344 kb on - strand at 3356.344 kb on - strand at 3356.344 kb on - strand at 3356.435 kb on + strand at 3356.436 kb on - strand at 3356.446 kb on + strand at 3356.447 kb on - strand at 3356.533 kb on - strand at 3356.622 kb on + strand, within AO353_15185 at 3356.623 kb on - strand, within AO353_15185 at 3356.655 kb on + strand, within AO353_15185 at 3356.656 kb on - strand, within AO353_15185 at 3356.656 kb on - strand, within AO353_15185 at 3356.656 kb on - strand, within AO353_15185 at 3356.656 kb on - strand, within AO353_15185 at 3356.943 kb on + strand, within AO353_15185 at 3356.943 kb on + strand, within AO353_15185 at 3356.943 kb on + strand, within AO353_15185 at 3357.201 kb on - strand, within AO353_15185 at 3357.201 kb on - strand, within AO353_15185 at 3357.267 kb on + strand, within AO353_15185 at 3357.267 kb on + strand, within AO353_15185 at 3357.356 kb on + strand, within AO353_15185 at 3357.356 kb on + strand, within AO353_15185 at 3357.357 kb on - strand, within AO353_15185 at 3357.357 kb on - strand, within AO353_15185 at 3357.379 kb on - strand, within AO353_15185 at 3357.403 kb on + strand, within AO353_15185 at 3357.404 kb on - strand, within AO353_15185 at 3357.404 kb on - strand, within AO353_15185 at 3357.404 kb on - strand, within AO353_15185 at 3357.433 kb on - strand at 3357.544 kb on + strand at 3357.544 kb on + strand at 3357.545 kb on - strand at 3357.575 kb on + strand at 3357.575 kb on + strand at 3357.576 kb on - strand at 3357.576 kb on - strand at 3357.576 kb on - strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.629 kb on + strand at 3357.630 kb on - strand at 3357.630 kb on - strand at 3357.630 kb on - strand at 3357.710 kb on - strand, within AO353_15190 at 3357.710 kb on - strand, within AO353_15190 at 3357.745 kb on - strand, within AO353_15190 at 3357.883 kb on - strand, within AO353_15190 at 3357.977 kb on + strand, within AO353_15190 at 3357.978 kb on - strand, within AO353_15190 at 3358.004 kb on + strand, within AO353_15190 at 3358.004 kb on + strand, within AO353_15190 at 3358.004 kb on + strand, within AO353_15190 at 3358.004 kb on + strand, within AO353_15190 at 3358.004 kb on + strand, within AO353_15190 at 3358.005 kb on - strand, within AO353_15190 at 3358.005 kb on - strand, within AO353_15190 at 3358.005 kb on - strand, within AO353_15190 at 3358.008 kb on + strand, within AO353_15190 at 3358.127 kb on + strand, within AO353_15190 at 3358.134 kb on - strand, within AO353_15190 at 3358.134 kb on - strand, within AO353_15190 at 3358.134 kb on - strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.268 kb on + strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.269 kb on - strand, within AO353_15190 at 3358.272 kb on + strand, within AO353_15190 at 3358.273 kb on - strand, within AO353_15190 at 3358.273 kb on - strand, within AO353_15190 at 3358.273 kb on - strand, within AO353_15190 at 3358.353 kb on + strand, within AO353_15190 at 3358.412 kb on + strand, within AO353_15190 at 3358.412 kb on + strand, within AO353_15190 at 3358.413 kb on - strand, within AO353_15190 at 3358.413 kb on - strand, within AO353_15190
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,356,344 - -1.1 3,356,344 - +1.0 3,356,344 - -0.1 3,356,344 - -0.4 3,356,435 + +0.6 3,356,436 - +0.7 3,356,446 + -2.0 3,356,447 - +1.0 3,356,533 - -2.0 3,356,622 + AO353_15185 0.17 -1.8 3,356,623 - AO353_15185 0.17 +0.7 3,356,655 + AO353_15185 0.20 +0.3 3,356,656 - AO353_15185 0.20 -2.3 3,356,656 - AO353_15185 0.20 +1.0 3,356,656 - AO353_15185 0.20 -0.2 3,356,656 - AO353_15185 0.20 -1.3 3,356,943 + AO353_15185 0.46 -1.5 3,356,943 + AO353_15185 0.46 -1.0 3,356,943 + AO353_15185 0.46 -1.8 3,357,201 - AO353_15185 0.70 -1.3 3,357,201 - AO353_15185 0.70 +0.6 3,357,267 + AO353_15185 0.76 -2.0 3,357,267 + AO353_15185 0.76 +0.4 3,357,356 + AO353_15185 0.84 -0.5 3,357,356 + AO353_15185 0.84 -0.5 3,357,357 - AO353_15185 0.84 -1.8 3,357,357 - AO353_15185 0.84 -1.3 3,357,379 - AO353_15185 0.86 -0.3 3,357,403 + AO353_15185 0.88 -0.3 3,357,404 - AO353_15185 0.88 -1.0 3,357,404 - AO353_15185 0.88 +0.6 3,357,404 - AO353_15185 0.88 +1.6 3,357,433 - -3.0 3,357,544 + -1.0 3,357,544 + +1.0 3,357,545 - -0.8 3,357,575 + -1.5 3,357,575 + -0.1 3,357,576 - -0.4 3,357,576 - +1.2 3,357,576 - +0.6 3,357,629 + +0.3 3,357,629 + +0.8 3,357,629 + +1.7 3,357,629 + +0.8 3,357,629 + -1.8 3,357,629 + +0.9 3,357,629 + -2.0 3,357,630 - -0.5 3,357,630 - -1.5 3,357,630 - -0.5 3,357,710 - AO353_15190 0.13 -0.8 3,357,710 - AO353_15190 0.13 -1.4 3,357,745 - AO353_15190 0.16 -0.7 3,357,883 - AO353_15190 0.30 -0.8 3,357,977 + AO353_15190 0.40 +0.6 3,357,978 - AO353_15190 0.40 +0.3 3,358,004 + AO353_15190 0.42 -1.3 3,358,004 + AO353_15190 0.42 -1.0 3,358,004 + AO353_15190 0.42 -0.7 3,358,004 + AO353_15190 0.42 +0.9 3,358,004 + AO353_15190 0.42 +0.0 3,358,005 - AO353_15190 0.43 +1.0 3,358,005 - AO353_15190 0.43 +0.0 3,358,005 - AO353_15190 0.43 +1.5 3,358,008 + AO353_15190 0.43 +0.3 3,358,127 + AO353_15190 0.55 +0.7 3,358,134 - AO353_15190 0.56 +1.0 3,358,134 - AO353_15190 0.56 -1.1 3,358,134 - AO353_15190 0.56 -1.0 3,358,268 + AO353_15190 0.69 -0.3 3,358,268 + AO353_15190 0.69 -0.3 3,358,268 + AO353_15190 0.69 +1.2 3,358,268 + AO353_15190 0.69 -0.3 3,358,268 + AO353_15190 0.69 +1.0 3,358,268 + AO353_15190 0.69 +1.0 3,358,269 - AO353_15190 0.69 +1.5 3,358,269 - AO353_15190 0.69 +0.0 3,358,269 - AO353_15190 0.69 -2.1 3,358,269 - AO353_15190 0.69 -0.5 3,358,269 - AO353_15190 0.69 -1.5 3,358,269 - AO353_15190 0.69 +0.0 3,358,269 - AO353_15190 0.69 +1.5 3,358,269 - AO353_15190 0.69 +0.1 3,358,272 + AO353_15190 0.69 -1.3 3,358,273 - AO353_15190 0.69 -0.2 3,358,273 - AO353_15190 0.69 +1.0 3,358,273 - AO353_15190 0.69 -1.0 3,358,353 + AO353_15190 0.78 -0.7 3,358,412 + AO353_15190 0.83 +0.3 3,358,412 + AO353_15190 0.83 -1.0 3,358,413 - AO353_15190 0.84 -2.8 3,358,413 - AO353_15190 0.84 -0.1
Or see this region's nucleotide sequence