Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09035 and AO353_09040 are separated by 4 nucleotides AO353_09040 and AO353_09045 are separated by 13 nucleotides AO353_09045 and AO353_09050 are separated by 2 nucleotides
AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409
_09035
AO353_09040: AO353_09040 - diaminopimelate epimerase, at 1,985,414 to 1,986,244
_09040
AO353_09045: AO353_09045 - hypothetical protein, at 1,986,258 to 1,986,983
_09045
AO353_09050: AO353_09050 - recombinase XerC, at 1,986,986 to 1,987,885
_09050
Position (kb)
1985
1986
1987 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1985.407 kb on + strand at 1985.428 kb on + strand at 1985.429 kb on - strand at 1985.500 kb on + strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.834 kb on + strand, within AO353_09040 at 1986.213 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.220 kb on - strand at 1986.221 kb on + strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.885 kb on + strand, within AO353_09045 at 1986.885 kb on + strand, within AO353_09045 at 1986.885 kb on + strand, within AO353_09045 at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.967 kb on + strand at 1986.967 kb on + strand at 1986.977 kb on - strand at 1987.226 kb on + strand, within AO353_09050 at 1987.226 kb on + strand, within AO353_09050 at 1987.227 kb on - strand, within AO353_09050
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,985,407 + -1.4 1,985,428 + -1.3 1,985,429 - -1.0 1,985,500 + AO353_09040 0.10 -0.3 1,985,501 - AO353_09040 0.10 -1.3 1,985,501 - AO353_09040 0.10 -1.2 1,985,834 + AO353_09040 0.51 -0.3 1,986,213 + -0.5 1,986,219 + -1.0 1,986,219 + -1.3 1,986,219 + +2.5 1,986,219 + -0.5 1,986,220 - -1.7 1,986,221 + +0.3 1,986,222 - -1.5 1,986,222 - -2.4 1,986,222 - -0.3 1,986,222 - -1.8 1,986,255 + -0.4 1,986,255 + -1.9 1,986,255 + -0.5 1,986,255 + +0.3 1,986,255 + +0.3 1,986,255 + +0.1 1,986,255 + -0.9 1,986,255 + -0.3 1,986,255 + +1.0 1,986,256 - +0.1 1,986,256 - -1.5 1,986,256 - -1.0 1,986,256 - +0.3 1,986,256 - -2.2 1,986,256 - -2.0 1,986,256 - -2.6 1,986,885 + AO353_09045 0.86 -0.1 1,986,885 + AO353_09045 0.86 -1.0 1,986,885 + AO353_09045 0.86 +0.8 1,986,913 + -0.0 1,986,913 + -0.6 1,986,913 + -0.5 1,986,913 + -0.4 1,986,913 + +0.3 1,986,913 + +0.4 1,986,914 - -0.7 1,986,914 - +1.3 1,986,914 - -0.7 1,986,914 - -1.0 1,986,914 - +0.1 1,986,914 - -1.3 1,986,914 - +0.9 1,986,918 + +1.7 1,986,918 + +0.7 1,986,918 + +0.9 1,986,918 + +0.7 1,986,919 - -1.3 1,986,919 - -1.9 1,986,919 - -3.1 1,986,919 - +0.3 1,986,919 - -0.3 1,986,919 - +0.1 1,986,967 + +0.8 1,986,967 + +0.2 1,986,977 - -1.5 1,987,226 + AO353_09050 0.27 -0.6 1,987,226 + AO353_09050 0.27 +0.3 1,987,227 - AO353_09050 0.27 -1.8
Or see this region's nucleotide sequence