Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03440

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03430 and AO353_03435 are separated by 75 nucleotidesAO353_03435 and AO353_03440 are separated by 118 nucleotidesAO353_03440 and AO353_03445 are separated by 120 nucleotides AO353_03430: AO353_03430 - methylglyoxal synthase, at 731,878 to 732,342 _03430 AO353_03435: AO353_03435 - RNA polymerase subunit sigma-24, at 732,418 to 732,936 _03435 AO353_03440: AO353_03440 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 733,055 to 734,026 _03440 AO353_03445: AO353_03445 - TonB-dependent receptor, at 734,147 to 736,711 _03445 Position (kb) 733 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 732.259 kb on + strand, within AO353_03430at 732.259 kb on + strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.322 kb on + strandat 732.323 kb on - strandat 732.340 kb on + strandat 732.340 kb on + strandat 732.341 kb on - strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strandat 732.532 kb on + strand, within AO353_03435at 732.554 kb on + strand, within AO353_03435at 732.555 kb on - strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.950 kb on + strandat 732.950 kb on + strandat 732.950 kb on + strandat 732.950 kb on + strandat 732.950 kb on + strandat 732.951 kb on - strandat 732.951 kb on - strandat 732.951 kb on - strandat 733.478 kb on - strand, within AO353_03440at 733.532 kb on + strand, within AO353_03440at 733.533 kb on - strand, within AO353_03440at 733.547 kb on + strand, within AO353_03440at 733.547 kb on + strand, within AO353_03440at 733.547 kb on + strand, within AO353_03440at 733.547 kb on + strand, within AO353_03440at 733.548 kb on - strand, within AO353_03440at 733.548 kb on - strand, within AO353_03440at 733.548 kb on - strand, within AO353_03440at 733.548 kb on - strand, within AO353_03440at 733.641 kb on - strand, within AO353_03440at 733.754 kb on - strand, within AO353_03440at 733.754 kb on - strand, within AO353_03440at 733.754 kb on - strand, within AO353_03440at 733.927 kb on + strand, within AO353_03440at 733.931 kb on + strandat 733.931 kb on + strandat 733.931 kb on + strandat 733.931 kb on + strandat 733.931 kb on + strandat 733.931 kb on + strandat 733.932 kb on - strandat 733.932 kb on - strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.116 kb on + strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.117 kb on - strandat 734.118 kb on + strandat 734.118 kb on + strandat 734.118 kb on + strandat 734.118 kb on + strandat 734.118 kb on + strandat 734.118 kb on + strandat 734.119 kb on - strandat 734.119 kb on - strandat 734.119 kb on - strandat 734.119 kb on - strandat 734.119 kb on - strandat 734.269 kb on + strandat 734.282 kb on + strandat 734.283 kb on - strandat 734.283 kb on - strandat 734.400 kb on + strandat 734.400 kb on + strandat 734.401 kb on - strandat 734.401 kb on - strandat 734.401 kb on - strandat 734.709 kb on - strand, within AO353_03445at 734.709 kb on - strand, within AO353_03445at 734.709 kb on - strand, within AO353_03445at 734.713 kb on + strand, within AO353_03445at 734.714 kb on - strand, within AO353_03445at 734.714 kb on - strand, within AO353_03445at 734.714 kb on - strand, within AO353_03445at 734.793 kb on - strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.813 kb on + strand, within AO353_03445at 734.814 kb on - strand, within AO353_03445at 734.814 kb on - strand, within AO353_03445at 734.814 kb on - strand, within AO353_03445at 734.814 kb on - strand, within AO353_03445at 734.814 kb on - strand, within AO353_03445at 734.873 kb on + strand, within AO353_03445at 734.906 kb on + strand, within AO353_03445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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732,259 + AO353_03430 0.82 -0.3
732,259 + AO353_03430 0.82 -0.3
732,260 - AO353_03430 0.82 -0.2
732,260 - AO353_03430 0.82 +0.8
732,260 - AO353_03430 0.82 +0.7
732,322 + +0.4
732,323 - -0.4
732,340 + +0.0
732,340 + -0.6
732,341 - +1.1
732,414 + +0.5
732,414 + -0.4
732,414 + -0.3
732,414 + +0.3
732,415 - -0.2
732,415 - -0.1
732,415 - +0.1
732,532 + AO353_03435 0.22 +1.2
732,532 + AO353_03435 0.22 +0.8
732,532 + AO353_03435 0.22 -1.5
732,532 + AO353_03435 0.22 +0.6
732,532 + -0.2
732,532 + AO353_03435 0.22 +0.6
732,554 + AO353_03435 0.26 +0.2
732,555 - AO353_03435 0.26 -0.2
732,826 + AO353_03435 0.79 +0.4
732,826 + AO353_03435 0.79 -0.8
732,826 + AO353_03435 0.79 -0.4
732,826 + AO353_03435 0.79 +1.1
732,826 + AO353_03435 0.79 -0.0
732,826 + AO353_03435 0.79 +0.7
732,826 + AO353_03435 0.79 -0.6
732,826 + AO353_03435 0.79 -1.2
732,827 - AO353_03435 0.79 +0.1
732,827 - AO353_03435 0.79 +0.6
732,827 - AO353_03435 0.79 +0.8
732,827 - AO353_03435 0.79 +0.1
732,827 - AO353_03435 0.79 -1.3
732,950 + +1.1
732,950 + +0.2
732,950 + +0.5
732,950 + +2.2
732,950 + -0.9
732,951 - -0.2
732,951 - +1.0
732,951 - -0.6
733,478 - AO353_03440 0.44 +0.4
733,532 + AO353_03440 0.49 +0.8
733,533 - AO353_03440 0.49 +1.1
733,547 + AO353_03440 0.51 +0.3
733,547 + AO353_03440 0.51 +0.8
733,547 + AO353_03440 0.51 +0.3
733,547 + AO353_03440 0.51 +0.2
733,548 - AO353_03440 0.51 +0.8
733,548 - AO353_03440 0.51 -0.8
733,548 - AO353_03440 0.51 +1.4
733,548 - AO353_03440 0.51 -0.4
733,641 - AO353_03440 0.60 +0.2
733,754 - AO353_03440 0.72 +0.2
733,754 - AO353_03440 0.72 +1.1
733,754 - AO353_03440 0.72 +0.5
733,927 + AO353_03440 0.90 +0.6
733,931 + -0.3
733,931 + +0.2
733,931 + -2.1
733,931 + -0.2
733,931 + +0.4
733,931 + -1.8
733,932 - -0.7
733,932 - -1.4
734,116 + +1.3
734,116 + -0.8
734,116 + -0.2
734,116 + +0.3
734,116 + +0.4
734,116 + +0.8
734,116 + -0.8
734,116 + +1.6
734,116 + +0.0
734,116 + -1.5
734,117 - +0.1
734,117 - +0.0
734,117 - -1.2
734,117 - -0.8
734,117 - +1.0
734,117 - +0.8
734,117 - +0.8
734,117 - -0.8
734,117 - +0.8
734,117 - -2.6
734,117 - -1.2
734,117 - +0.6
734,118 + +0.6
734,118 + +1.1
734,118 + +0.1
734,118 + +0.5
734,118 + +0.2
734,118 + -0.2
734,119 - -0.7
734,119 - -1.1
734,119 - -0.0
734,119 - +0.3
734,119 - +0.2
734,269 + +0.1
734,282 + -0.6
734,283 - +0.2
734,283 - +0.5
734,400 + -0.2
734,400 + -1.0
734,401 - +0.4
734,401 - +0.0
734,401 - -0.3
734,709 - AO353_03445 0.22 -2.0
734,709 - AO353_03445 0.22 -0.8
734,709 - AO353_03445 0.22 -0.7
734,713 + AO353_03445 0.22 +0.2
734,714 - AO353_03445 0.22 +1.4
734,714 - AO353_03445 0.22 +0.6
734,714 - AO353_03445 0.22 +0.1
734,793 - AO353_03445 0.25 +2.1
734,813 + AO353_03445 0.26 +0.5
734,813 + AO353_03445 0.26 -0.2
734,813 + AO353_03445 0.26 -1.5
734,813 + AO353_03445 0.26 -0.4
734,813 + AO353_03445 0.26 -0.1
734,813 + AO353_03445 0.26 +0.8
734,813 + AO353_03445 0.26 -1.4
734,813 + AO353_03445 0.26 +0.1
734,813 + AO353_03445 0.26 +0.3
734,814 - AO353_03445 0.26 -0.4
734,814 - AO353_03445 0.26 +0.2
734,814 - AO353_03445 0.26 +0.2
734,814 - AO353_03445 0.26 +0.2
734,814 - AO353_03445 0.26 +0.6
734,873 + AO353_03445 0.28 -2.9
734,906 + AO353_03445 0.30 -0.2

Or see this region's nucleotide sequence