Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02620

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02615 and AO353_02620 overlap by 4 nucleotidesAO353_02620 and AO353_02625 overlap by 8 nucleotidesAO353_02625 and AO353_02630 overlap by 4 nucleotides AO353_02615: AO353_02615 - cobyric acid synthase, at 557,364 to 558,815 _02615 AO353_02620: AO353_02620 - threonine-phosphate decarboxylase, at 558,812 to 559,804 _02620 AO353_02625: AO353_02625 - cobalamin biosynthesis protein CobD, at 559,797 to 560,705 _02625 AO353_02630: AO353_02630 - 5,6-dimethylbenzimidazole synthase, at 560,702 to 561,352 _02630 Position (kb) 558 559 560Strain fitness (log2 ratio) -2 -1 0 1 2 3at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.871 kb on - strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.306 kb on + strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.572 kb on + strand, within AO353_02615at 558.831 kb on + strandat 558.832 kb on - strandat 559.272 kb on + strand, within AO353_02620at 559.272 kb on + strand, within AO353_02620at 559.272 kb on + strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.482 kb on + strand, within AO353_02620at 559.518 kb on + strand, within AO353_02620at 559.519 kb on - strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.623 kb on + strand, within AO353_02620at 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 560.066 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.081 kb on - strand, within AO353_02625at 560.081 kb on - strand, within AO353_02625at 560.108 kb on + strand, within AO353_02625at 560.108 kb on + strand, within AO353_02625at 560.109 kb on - strand, within AO353_02625at 560.109 kb on - strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.263 kb on - strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.453 kb on - strandat 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.486 kb on - strand, within AO353_02625at 560.529 kb on + strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.538 kb on + strand, within AO353_02625at 560.539 kb on - strand, within AO353_02625at 560.550 kb on - strand, within AO353_02625at 560.730 kb on + strandat 560.731 kb on - strandat 560.744 kb on + strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.777 kb on + strand, within AO353_02630at 560.777 kb on + strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.793 kb on + strand, within AO353_02630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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557,832 + AO353_02615 0.32 +0.4
557,832 + AO353_02615 0.32 -1.0
557,832 + AO353_02615 0.32 -1.2
557,832 + AO353_02615 0.32 -2.0
557,832 + AO353_02615 0.32 -0.2
557,832 + AO353_02615 0.32 +0.4
557,832 + AO353_02615 0.32 +0.6
557,833 - AO353_02615 0.32 +0.6
557,833 - AO353_02615 0.32 +0.8
557,833 - AO353_02615 0.32 +0.4
557,833 - AO353_02615 0.32 +0.4
557,833 - AO353_02615 0.32 +0.1
557,833 - AO353_02615 0.32 -0.2
557,833 - AO353_02615 0.32 -1.3
557,833 - AO353_02615 0.32 -0.2
557,833 - AO353_02615 0.32 -0.2
557,871 - AO353_02615 0.35 -0.4
557,902 + AO353_02615 0.37 +0.8
557,902 + AO353_02615 0.37 -1.8
557,902 + AO353_02615 0.37 +1.8
557,902 + AO353_02615 0.37 +0.4
557,903 - AO353_02615 0.37 -1.0
557,903 - AO353_02615 0.37 +0.8
557,903 - AO353_02615 0.37 -0.8
557,903 - AO353_02615 0.37 +0.3
558,142 + AO353_02615 0.54 +0.5
558,142 + AO353_02615 0.54 -0.8
558,142 + AO353_02615 0.54 +0.8
558,142 + AO353_02615 0.54 +0.4
558,143 - AO353_02615 0.54 +1.1
558,143 - AO353_02615 0.54 -0.5
558,306 + AO353_02615 0.65 +0.2
558,500 - AO353_02615 0.78 +0.8
558,500 - AO353_02615 0.78 +0.4
558,500 - AO353_02615 0.78 -0.2
558,572 + AO353_02615 0.83 +0.1
558,831 + +0.8
558,832 - +2.6
559,272 + AO353_02620 0.46 -1.8
559,272 + AO353_02620 0.46 -1.2
559,272 + AO353_02620 0.46 +1.1
559,273 - AO353_02620 0.46 +0.2
559,273 - AO353_02620 0.46 +0.8
559,273 - AO353_02620 0.46 -0.1
559,273 - AO353_02620 0.46 +0.8
559,273 - AO353_02620 0.46 -1.2
559,273 - AO353_02620 0.46 -0.1
559,482 + AO353_02620 0.67 -0.7
559,518 + AO353_02620 0.71 -0.5
559,519 - AO353_02620 0.71 +0.5
559,620 + AO353_02620 0.81 -0.1
559,620 + AO353_02620 0.81 -0.0
559,620 + AO353_02620 0.81 -2.0
559,620 + AO353_02620 0.81 +0.4
559,621 - AO353_02620 0.81 -0.5
559,621 - AO353_02620 0.81 -0.8
559,621 - AO353_02620 0.81 +0.4
559,621 - AO353_02620 0.81 -0.8
559,621 - AO353_02620 0.81 -1.3
559,623 + AO353_02620 0.82 -2.2
559,804 + -0.5
559,804 + +3.1
559,804 + -0.0
559,804 + -1.5
559,804 + +0.6
559,805 - -0.2
559,805 - +0.1
559,805 - +1.2
559,805 - -0.9
559,805 - +0.5
559,805 - +0.4
559,942 + AO353_02625 0.16 -0.2
559,942 + AO353_02625 0.16 -0.4
559,942 + AO353_02625 0.16 -0.3
559,942 + AO353_02625 0.16 +2.1
559,943 - AO353_02625 0.16 +0.5
559,943 - AO353_02625 0.16 -0.1
559,943 - AO353_02625 0.16 -0.0
560,066 + AO353_02625 0.30 -1.5
560,080 + AO353_02625 0.31 -1.0
560,080 + AO353_02625 0.31 -0.0
560,080 + AO353_02625 0.31 -0.8
560,080 + AO353_02625 0.31 +1.8
560,080 + AO353_02625 0.31 -0.2
560,080 + AO353_02625 0.31 -0.1
560,081 - AO353_02625 0.31 -1.2
560,081 - AO353_02625 0.31 -0.6
560,108 + AO353_02625 0.34 +1.4
560,108 + AO353_02625 0.34 +0.5
560,109 - AO353_02625 0.34 +0.8
560,109 - AO353_02625 0.34 -1.2
560,110 + AO353_02625 0.34 -0.1
560,110 + AO353_02625 0.34 -0.9
560,110 + AO353_02625 0.34 -0.6
560,110 + AO353_02625 0.34 +0.2
560,110 + AO353_02625 0.34 +0.4
560,110 + AO353_02625 0.34 -0.8
560,110 + AO353_02625 0.34 +2.8
560,111 - AO353_02625 0.35 -0.8
560,111 - AO353_02625 0.35 +1.5
560,111 - AO353_02625 0.35 +1.4
560,111 - AO353_02625 0.35 +1.9
560,111 - AO353_02625 0.35 +0.8
560,111 - AO353_02625 0.35 +1.8
560,111 - AO353_02625 0.35 -1.1
560,111 - AO353_02625 0.35 -1.0
560,111 - AO353_02625 0.35 -1.8
560,111 - AO353_02625 0.35 -0.2
560,111 - AO353_02625 0.35 +0.4
560,111 - AO353_02625 0.35 -0.8
560,111 - AO353_02625 0.35 -0.0
560,111 - AO353_02625 0.35 +0.6
560,111 - AO353_02625 0.35 -0.1
560,111 - AO353_02625 0.35 +0.4
560,263 - AO353_02625 0.51 -0.7
560,452 + AO353_02625 0.72 -0.4
560,452 + AO353_02625 0.72 -0.4
560,452 + AO353_02625 0.72 -0.2
560,452 + AO353_02625 0.72 -0.9
560,452 + AO353_02625 0.72 -0.3
560,453 - -0.8
560,453 - AO353_02625 0.72 -0.4
560,453 - AO353_02625 0.72 +0.8
560,453 - AO353_02625 0.72 +0.8
560,453 - AO353_02625 0.72 -0.1
560,453 - AO353_02625 0.72 +0.2
560,481 + AO353_02625 0.75 -1.8
560,481 + AO353_02625 0.75 +0.0
560,482 - AO353_02625 0.75 +0.8
560,482 - AO353_02625 0.75 +0.9
560,485 + AO353_02625 0.76 +0.1
560,485 + AO353_02625 0.76 +0.7
560,485 + AO353_02625 0.76 +1.2
560,485 + AO353_02625 0.76 +0.2
560,486 - AO353_02625 0.76 -0.3
560,529 + AO353_02625 0.81 +0.1
560,530 - AO353_02625 0.81 -1.2
560,530 - AO353_02625 0.81 +0.1
560,538 + AO353_02625 0.82 +0.8
560,539 - AO353_02625 0.82 -1.5
560,550 - AO353_02625 0.83 -0.5
560,730 + -0.8
560,731 - +1.3
560,744 + +0.0
560,745 - +0.1
560,745 - +1.5
560,745 - -0.6
560,777 + AO353_02630 0.12 -0.0
560,777 + AO353_02630 0.12 +1.4
560,778 - AO353_02630 0.12 -0.8
560,778 - AO353_02630 0.12 -0.4
560,793 + AO353_02630 0.14 -0.7

Or see this region's nucleotide sequence