Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02070

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02065 and AO353_02070 are separated by 11 nucleotidesAO353_02070 and AO353_02075 overlap by 1 nucleotides AO353_02065: AO353_02065 - aspartate aminotransferase, at 439,987 to 441,099 _02065 AO353_02070: AO353_02070 - prephenate dehydratase, at 441,111 to 442,205 _02070 AO353_02075: AO353_02075 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 442,205 to 443,290 _02075 Position (kb) 441 442 443Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.379 kb on - strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.406 kb on - strand, within AO353_02065at 440.492 kb on + strand, within AO353_02065at 440.493 kb on - strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 441.045 kb on - strandat 441.045 kb on - strandat 441.045 kb on - strandat 441.100 kb on + strandat 441.101 kb on - strandat 441.101 kb on - strandat 441.112 kb on + strandat 441.113 kb on - strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.189 kb on + strandat 441.190 kb on - strandat 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.708 kb on - strand, within AO353_02070at 441.913 kb on + strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.085 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.236 kb on + strandat 442.236 kb on + strandat 442.236 kb on + strandat 442.236 kb on + strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.279 kb on - strandat 442.279 kb on - strandat 442.283 kb on - strandat 442.283 kb on - strandat 442.283 kb on - strandat 442.437 kb on + strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.464 kb on + strand, within AO353_02075at 442.464 kb on + strand, within AO353_02075at 442.465 kb on - strand, within AO353_02075at 442.554 kb on + strand, within AO353_02075at 442.554 kb on + strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.581 kb on + strand, within AO353_02075at 442.581 kb on + strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.611 kb on + strand, within AO353_02075at 442.611 kb on + strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.716 kb on + strand, within AO353_02075at 442.717 kb on - strand, within AO353_02075at 442.717 kb on - strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.848 kb on + strand, within AO353_02075at 442.857 kb on + strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.908 kb on + strand, within AO353_02075at 442.908 kb on + strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.915 kb on - strand, within AO353_02075at 442.987 kb on + strand, within AO353_02075at 443.000 kb on - strand, within AO353_02075at 443.001 kb on + strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.088 kb on + strand, within AO353_02075at 443.088 kb on + strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.101 kb on + strand, within AO353_02075

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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440,267 + AO353_02065 0.25 +0.8
440,267 + AO353_02065 0.25 -1.5
440,267 + AO353_02065 0.25 -2.0
440,268 - AO353_02065 0.25 +0.5
440,268 - AO353_02065 0.25 -0.6
440,379 - AO353_02065 0.35 +0.2
440,405 + AO353_02065 0.38 +0.8
440,405 + AO353_02065 0.38 -0.1
440,406 - AO353_02065 0.38 +0.8
440,492 + AO353_02065 0.45 -1.2
440,493 - AO353_02065 0.45 -0.2
440,501 + AO353_02065 0.46 +0.5
440,501 + AO353_02065 0.46 +0.8
440,501 + AO353_02065 0.46 -0.9
440,501 + AO353_02065 0.46 -0.8
440,501 + AO353_02065 0.46 +0.8
440,501 + AO353_02065 0.46 +0.8
440,501 + AO353_02065 0.46 +0.8
440,502 - AO353_02065 0.46 +0.4
440,502 - AO353_02065 0.46 -0.8
440,502 - AO353_02065 0.46 -0.2
440,502 - AO353_02065 0.46 +1.2
440,502 - AO353_02065 0.46 +1.0
440,502 - AO353_02065 0.46 +0.5
440,502 - AO353_02065 0.46 +0.0
440,502 - AO353_02065 0.46 +0.9
440,502 - AO353_02065 0.46 -1.9
440,502 - AO353_02065 0.46 -0.2
440,502 - AO353_02065 0.46 +1.4
440,502 - AO353_02065 0.46 +0.2
440,774 + AO353_02065 0.71 -3.2
440,774 + AO353_02065 0.71 -1.4
440,774 + AO353_02065 0.71 -1.5
440,775 - AO353_02065 0.71 -1.2
440,775 - AO353_02065 0.71 +0.5
440,775 - AO353_02065 0.71 +1.0
440,775 - AO353_02065 0.71 +1.4
441,045 - +1.5
441,045 - +0.4
441,045 - +1.3
441,100 + +0.2
441,101 - -0.2
441,101 - +0.4
441,112 + -0.2
441,113 - +1.5
441,146 + -1.2
441,146 + +0.2
441,146 + -0.8
441,146 + +0.8
441,146 + -1.9
441,146 + -0.4
441,146 + +0.8
441,146 + -0.2
441,146 + -0.2
441,147 - +0.8
441,147 - -0.8
441,147 - -0.6
441,189 + -1.1
441,190 - +0.0
441,235 + AO353_02070 0.11 -1.8
441,235 + AO353_02070 0.11 -1.2
441,235 + AO353_02070 0.11 -1.3
441,236 - AO353_02070 0.11 -1.2
441,236 - AO353_02070 0.11 -1.6
441,236 - AO353_02070 0.11 -0.5
441,236 - AO353_02070 0.11 +1.0
441,236 - AO353_02070 0.11 +0.0
441,236 - AO353_02070 0.11 -0.2
441,236 - AO353_02070 0.11 -0.6
441,466 + AO353_02070 0.32 -0.6
441,466 + AO353_02070 0.32 -0.2
441,466 + AO353_02070 0.32 -2.0
441,466 + AO353_02070 0.32 -0.8
441,466 + AO353_02070 0.32 -0.4
441,625 + AO353_02070 0.47 -1.5
441,625 + AO353_02070 0.47 -1.8
441,625 + AO353_02070 0.47 -1.8
441,626 - AO353_02070 0.47 -2.9
441,626 - AO353_02070 0.47 -0.8
441,626 - AO353_02070 0.47 +0.8
441,626 - AO353_02070 0.47 +0.0
441,626 - AO353_02070 0.47 -1.0
441,707 + AO353_02070 0.54 -1.0
441,707 + AO353_02070 0.54 -0.0
441,707 + AO353_02070 0.54 +0.0
441,708 - AO353_02070 0.55 +1.2
441,913 + AO353_02070 0.73 -0.2
442,055 - AO353_02070 0.86 -1.2
442,055 - AO353_02070 0.86 -1.2
442,085 + AO353_02070 0.89 -2.8
442,095 + AO353_02070 0.90 +0.2
442,095 + AO353_02070 0.90 +0.0
442,236 + -1.8
442,236 + -2.9
442,236 + -0.5
442,236 + -0.2
442,237 - -0.2
442,237 - +0.0
442,237 - -1.2
442,237 - -0.2
442,237 - -1.3
442,237 - +0.3
442,237 - +0.2
442,237 - -0.7
442,278 + -1.3
442,278 + -1.2
442,278 + -1.5
442,278 + -0.5
442,278 + -0.2
442,279 - -1.8
442,279 - -1.5
442,283 - -0.5
442,283 - +0.0
442,283 - +0.3
442,437 + AO353_02075 0.21 +3.1
442,438 - AO353_02075 0.21 +0.2
442,438 - AO353_02075 0.21 -2.2
442,438 - AO353_02075 0.21 +0.4
442,438 - AO353_02075 0.21 -0.1
442,438 - AO353_02075 0.21 +1.5
442,438 - AO353_02075 0.21 -0.4
442,438 - AO353_02075 0.21 -0.5
442,464 + AO353_02075 0.24 -0.2
442,464 + AO353_02075 0.24 -1.5
442,465 - AO353_02075 0.24 +0.1
442,554 + AO353_02075 0.32 -0.7
442,554 + AO353_02075 0.32 -1.5
442,555 - AO353_02075 0.32 +0.2
442,555 - AO353_02075 0.32 +0.3
442,555 - AO353_02075 0.32 +0.9
442,555 - AO353_02075 0.32 +1.3
442,555 - AO353_02075 0.32 +0.8
442,581 + AO353_02075 0.35 -0.8
442,581 + AO353_02075 0.35 -0.8
442,582 - AO353_02075 0.35 -1.2
442,582 - AO353_02075 0.35 +0.3
442,582 - AO353_02075 0.35 -1.2
442,582 - AO353_02075 0.35 +0.0
442,582 - AO353_02075 0.35 -1.2
442,611 + AO353_02075 0.37 -1.4
442,611 + AO353_02075 0.37 -0.8
442,612 - AO353_02075 0.37 +1.1
442,612 - AO353_02075 0.37 +0.8
442,612 - AO353_02075 0.37 -0.2
442,716 + AO353_02075 0.47 -2.0
442,717 - AO353_02075 0.47 -0.7
442,717 - AO353_02075 0.47 -1.3
442,721 + AO353_02075 0.48 -1.0
442,721 + AO353_02075 0.48 -0.2
442,721 + AO353_02075 0.48 -0.5
442,722 - AO353_02075 0.48 -1.0
442,722 - AO353_02075 0.48 +0.0
442,722 - AO353_02075 0.48 +0.4
442,848 + AO353_02075 0.59 +0.8
442,857 + AO353_02075 0.60 -1.0
442,858 - AO353_02075 0.60 +0.1
442,858 - AO353_02075 0.60 +0.1
442,858 - AO353_02075 0.60 -0.5
442,858 - AO353_02075 0.60 -0.0
442,908 + AO353_02075 0.65 -3.1
442,908 + AO353_02075 0.65 -2.2
442,909 - AO353_02075 0.65 -0.2
442,909 - AO353_02075 0.65 -1.2
442,909 - AO353_02075 0.65 -0.2
442,909 - AO353_02075 0.65 -0.2
442,915 - AO353_02075 0.65 -0.1
442,987 + AO353_02075 0.72 +0.0
443,000 - AO353_02075 0.73 -2.4
443,001 + AO353_02075 0.73 -0.9
443,002 - AO353_02075 0.73 -0.5
443,002 - AO353_02075 0.73 +0.5
443,002 - AO353_02075 0.73 -0.8
443,086 + AO353_02075 0.81 +0.2
443,086 + AO353_02075 0.81 -1.8
443,086 + AO353_02075 0.81 -0.5
443,086 + AO353_02075 0.81 -1.0
443,086 + AO353_02075 0.81 -0.2
443,087 - AO353_02075 0.81 -1.8
443,087 - AO353_02075 0.81 +0.4
443,087 - AO353_02075 0.81 -0.3
443,087 - AO353_02075 0.81 -0.6
443,087 - AO353_02075 0.81 +0.2
443,087 - AO353_02075 0.81 +0.2
443,088 + AO353_02075 0.81 -0.8
443,088 + AO353_02075 0.81 -3.0
443,089 - AO353_02075 0.81 -1.9
443,089 - AO353_02075 0.81 -0.4
443,089 - AO353_02075 0.81 -2.4
443,089 - AO353_02075 0.81 +0.1
443,089 - AO353_02075 0.81 +0.8
443,101 + AO353_02075 0.83 -0.2

Or see this region's nucleotide sequence