Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01960 and AO353_01965 are separated by 226 nucleotides AO353_01965 and AO353_01970 are separated by 114 nucleotides AO353_01970 and AO353_01975 are separated by 86 nucleotides
AO353_01960: AO353_01960 - hypothetical protein, at 414,766 to 415,386
_01960
AO353_01965: AO353_01965 - competence protein ComEA, at 415,613 to 415,948
_01965
AO353_01970: AO353_01970 - hypothetical protein, at 416,063 to 418,057
_01970
AO353_01975: AO353_01975 - glycosyl transferase, at 418,144 to 419,163
_01975
Position (kb)
416
417
418
419 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 415.120 kb on + strand, within AO353_01960 at 415.121 kb on - strand, within AO353_01960 at 415.139 kb on + strand, within AO353_01960 at 415.139 kb on + strand, within AO353_01960 at 415.139 kb on + strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.140 kb on - strand, within AO353_01960 at 415.369 kb on + strand at 415.435 kb on + strand at 415.436 kb on - strand at 415.466 kb on + strand at 415.467 kb on - strand at 415.467 kb on - strand at 415.555 kb on + strand at 415.555 kb on + strand at 415.555 kb on + strand at 415.555 kb on + strand at 415.556 kb on - strand at 415.556 kb on - strand at 415.708 kb on + strand, within AO353_01965 at 415.708 kb on + strand, within AO353_01965 at 415.709 kb on - strand, within AO353_01965 at 415.709 kb on - strand, within AO353_01965 at 415.836 kb on - strand, within AO353_01965 at 415.853 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.894 kb on + strand, within AO353_01965 at 415.895 kb on - strand, within AO353_01965 at 415.895 kb on - strand, within AO353_01965 at 415.930 kb on - strand at 415.935 kb on + strand at 415.936 kb on - strand at 415.942 kb on + strand at 415.942 kb on + strand at 415.942 kb on + strand at 415.942 kb on + strand at 415.948 kb on + strand at 415.949 kb on - strand at 415.949 kb on - strand at 415.949 kb on - strand at 415.971 kb on + strand at 416.010 kb on + strand at 416.039 kb on + strand at 416.040 kb on - strand at 416.088 kb on + strand at 416.088 kb on + strand at 416.089 kb on - strand at 416.089 kb on - strand at 416.121 kb on + strand at 416.163 kb on + strand at 416.163 kb on + strand at 416.163 kb on + strand at 416.164 kb on - strand at 416.164 kb on - strand at 416.164 kb on - strand at 416.291 kb on + strand, within AO353_01970 at 416.301 kb on + strand, within AO353_01970 at 416.301 kb on + strand, within AO353_01970 at 416.302 kb on - strand, within AO353_01970 at 416.521 kb on - strand, within AO353_01970 at 416.575 kb on + strand, within AO353_01970 at 416.661 kb on - strand, within AO353_01970 at 416.661 kb on - strand, within AO353_01970 at 416.661 kb on - strand, within AO353_01970 at 416.661 kb on - strand, within AO353_01970 at 416.704 kb on + strand, within AO353_01970 at 416.704 kb on + strand, within AO353_01970 at 416.704 kb on + strand, within AO353_01970 at 416.704 kb on + strand, within AO353_01970 at 416.705 kb on - strand, within AO353_01970 at 416.899 kb on + strand, within AO353_01970 at 416.899 kb on + strand, within AO353_01970 at 416.899 kb on + strand, within AO353_01970 at 416.899 kb on + strand, within AO353_01970 at 416.900 kb on - strand, within AO353_01970 at 416.900 kb on - strand, within AO353_01970 at 416.900 kb on - strand, within AO353_01970 at 416.901 kb on + strand, within AO353_01970 at 416.902 kb on - strand, within AO353_01970 at 416.902 kb on - strand, within AO353_01970 at 416.902 kb on - strand, within AO353_01970 at 416.902 kb on - strand, within AO353_01970 at 416.945 kb on + strand, within AO353_01970 at 416.946 kb on - strand, within AO353_01970 at 417.051 kb on + strand, within AO353_01970 at 417.051 kb on + strand, within AO353_01970 at 417.052 kb on - strand, within AO353_01970 at 417.092 kb on - strand at 417.176 kb on - strand, within AO353_01970 at 417.176 kb on - strand, within AO353_01970 at 417.176 kb on - strand, within AO353_01970 at 417.176 kb on - strand, within AO353_01970 at 417.176 kb on - strand, within AO353_01970 at 417.421 kb on + strand, within AO353_01970 at 417.421 kb on + strand, within AO353_01970 at 417.421 kb on + strand, within AO353_01970 at 417.422 kb on - strand, within AO353_01970 at 417.422 kb on - strand, within AO353_01970 at 417.435 kb on + strand, within AO353_01970 at 417.454 kb on + strand, within AO353_01970 at 417.454 kb on + strand, within AO353_01970 at 417.454 kb on + strand, within AO353_01970 at 417.561 kb on + strand, within AO353_01970 at 417.562 kb on - strand, within AO353_01970 at 417.562 kb on - strand, within AO353_01970 at 417.562 kb on - strand, within AO353_01970 at 417.562 kb on - strand, within AO353_01970 at 417.562 kb on - strand, within AO353_01970 at 417.642 kb on + strand, within AO353_01970 at 417.643 kb on - strand, within AO353_01970 at 417.643 kb on - strand, within AO353_01970 at 417.643 kb on - strand, within AO353_01970 at 417.643 kb on - strand, within AO353_01970 at 417.643 kb on - strand, within AO353_01970 at 417.662 kb on + strand, within AO353_01970 at 417.663 kb on - strand, within AO353_01970 at 417.696 kb on + strand, within AO353_01970 at 417.696 kb on + strand, within AO353_01970 at 417.696 kb on + strand, within AO353_01970 at 417.697 kb on - strand, within AO353_01970 at 417.697 kb on - strand, within AO353_01970 at 417.697 kb on - strand, within AO353_01970 at 417.697 kb on - strand, within AO353_01970 at 417.742 kb on - strand, within AO353_01970 at 417.742 kb on - strand, within AO353_01970 at 417.742 kb on - strand, within AO353_01970 at 417.748 kb on - strand, within AO353_01970 at 417.748 kb on - strand, within AO353_01970 at 417.754 kb on + strand, within AO353_01970 at 417.755 kb on - strand, within AO353_01970 at 417.755 kb on - strand, within AO353_01970 at 417.755 kb on - strand, within AO353_01970 at 417.782 kb on + strand, within AO353_01970 at 417.783 kb on - strand, within AO353_01970 at 417.801 kb on - strand, within AO353_01970 at 417.823 kb on - strand, within AO353_01970 at 417.840 kb on + strand, within AO353_01970 at 417.840 kb on + strand, within AO353_01970 at 417.841 kb on - strand, within AO353_01970 at 417.841 kb on - strand at 417.905 kb on + strand at 417.906 kb on - strand at 417.906 kb on - strand at 417.906 kb on - strand at 417.911 kb on + strand at 417.949 kb on + strand at 417.949 kb on + strand at 417.950 kb on - strand at 418.045 kb on + strand at 418.046 kb on - strand at 418.046 kb on - strand at 418.057 kb on + strand at 418.058 kb on - strand at 418.073 kb on + strand at 418.073 kb on + strand at 418.074 kb on - strand at 418.118 kb on + strand at 418.119 kb on - strand at 418.131 kb on - strand at 418.131 kb on - strand at 418.203 kb on + strand at 418.203 kb on + strand at 418.204 kb on - strand at 418.204 kb on - strand at 418.205 kb on + strand at 418.241 kb on + strand at 418.242 kb on - strand at 418.347 kb on - strand, within AO353_01975 at 418.371 kb on - strand, within AO353_01975 at 418.371 kb on - strand, within AO353_01975 at 418.371 kb on - strand, within AO353_01975 at 418.371 kb on - strand, within AO353_01975 at 418.371 kb on - strand, within AO353_01975 at 418.504 kb on + strand, within AO353_01975 at 418.504 kb on + strand, within AO353_01975 at 418.504 kb on + strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.505 kb on - strand, within AO353_01975 at 418.507 kb on + strand, within AO353_01975 at 418.508 kb on - strand, within AO353_01975 at 418.560 kb on + strand, within AO353_01975 at 418.560 kb on + strand, within AO353_01975 at 418.570 kb on + strand, within AO353_01975 at 418.570 kb on + strand, within AO353_01975 at 418.571 kb on - strand, within AO353_01975 at 418.571 kb on - strand, within AO353_01975 at 418.571 kb on - strand, within AO353_01975 at 418.640 kb on + strand, within AO353_01975 at 418.689 kb on + strand, within AO353_01975 at 418.689 kb on + strand, within AO353_01975 at 418.689 kb on + strand, within AO353_01975 at 418.690 kb on - strand, within AO353_01975 at 418.690 kb on - strand, within AO353_01975 at 418.723 kb on + strand, within AO353_01975 at 418.739 kb on + strand, within AO353_01975 at 418.739 kb on + strand, within AO353_01975 at 418.740 kb on - strand, within AO353_01975 at 418.741 kb on + strand, within AO353_01975 at 418.741 kb on + strand, within AO353_01975 at 418.742 kb on - strand, within AO353_01975 at 418.798 kb on - strand, within AO353_01975 at 418.845 kb on + strand, within AO353_01975 at 418.845 kb on + strand, within AO353_01975 at 418.846 kb on - strand, within AO353_01975 at 418.846 kb on - strand, within AO353_01975 at 418.876 kb on + strand, within AO353_01975 at 418.877 kb on - strand, within AO353_01975 at 419.005 kb on + strand, within AO353_01975 at 419.006 kb on - strand, within AO353_01975 at 419.042 kb on - strand, within AO353_01975 at 419.052 kb on + strand, within AO353_01975 at 419.053 kb on - strand, within AO353_01975
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 415,120 + AO353_01960 0.57 +1.9 415,121 - AO353_01960 0.57 +1.8 415,139 + AO353_01960 0.60 -0.1 415,139 + AO353_01960 0.60 -0.4 415,139 + AO353_01960 0.60 +0.4 415,140 - AO353_01960 0.60 -1.0 415,140 - AO353_01960 0.60 -1.0 415,140 - AO353_01960 0.60 +1.2 415,140 - AO353_01960 0.60 -0.1 415,140 - AO353_01960 0.60 -1.2 415,140 - AO353_01960 0.60 -0.2 415,140 - AO353_01960 0.60 -1.5 415,140 - AO353_01960 0.60 +1.0 415,140 - AO353_01960 0.60 +0.4 415,140 - AO353_01960 0.60 +0.0 415,140 - AO353_01960 0.60 +0.7 415,369 + +2.7 415,435 + +0.8 415,436 - -0.4 415,466 + -0.2 415,467 - -0.2 415,467 - +0.5 415,555 + -0.2 415,555 + -1.5 415,555 + -0.2 415,555 + +1.8 415,556 - +0.4 415,556 - +0.0 415,708 + AO353_01965 0.28 +0.2 415,708 + AO353_01965 0.28 -0.2 415,709 - AO353_01965 0.29 -0.8 415,709 - AO353_01965 0.29 -1.0 415,836 - AO353_01965 0.66 -1.2 415,853 + AO353_01965 0.71 -0.2 415,894 + AO353_01965 0.84 -0.8 415,894 + AO353_01965 0.84 +0.2 415,894 + AO353_01965 0.84 -0.2 415,894 + AO353_01965 0.84 +0.8 415,894 + AO353_01965 0.84 -0.2 415,894 + AO353_01965 0.84 -0.4 415,894 + AO353_01965 0.84 +1.8 415,895 - AO353_01965 0.84 -2.0 415,895 - AO353_01965 0.84 +0.2 415,930 - -0.0 415,935 + +0.8 415,936 - +1.5 415,942 + -1.7 415,942 + +0.6 415,942 + -2.0 415,942 + -0.1 415,948 + +0.4 415,949 - +0.5 415,949 - +0.4 415,949 - -2.0 415,971 + -0.8 416,010 + -0.4 416,039 + -1.8 416,040 - +0.5 416,088 + -1.2 416,088 + -1.2 416,089 - -1.5 416,089 - +0.0 416,121 + +1.5 416,163 + -1.8 416,163 + +1.8 416,163 + +0.1 416,164 - +0.8 416,164 - -2.0 416,164 - -0.4 416,291 + AO353_01970 0.11 +0.0 416,301 + AO353_01970 0.12 -0.6 416,301 + AO353_01970 0.12 +0.2 416,302 - AO353_01970 0.12 -0.8 416,521 - AO353_01970 0.23 -2.2 416,575 + AO353_01970 0.26 +0.8 416,661 - AO353_01970 0.30 -1.0 416,661 - AO353_01970 0.30 -0.6 416,661 - AO353_01970 0.30 -1.8 416,661 - AO353_01970 0.30 +0.8 416,704 + AO353_01970 0.32 -1.2 416,704 + AO353_01970 0.32 -0.4 416,704 + AO353_01970 0.32 -0.4 416,704 + AO353_01970 0.32 -1.4 416,705 - AO353_01970 0.32 -0.2 416,899 + AO353_01970 0.42 +0.4 416,899 + AO353_01970 0.42 +0.5 416,899 + AO353_01970 0.42 +0.1 416,899 + AO353_01970 0.42 -0.2 416,900 - AO353_01970 0.42 -1.5 416,900 - AO353_01970 0.42 -1.0 416,900 - AO353_01970 0.42 -1.5 416,901 + AO353_01970 0.42 -0.8 416,902 - AO353_01970 0.42 +0.8 416,902 - AO353_01970 0.42 -1.7 416,902 - AO353_01970 0.42 +0.4 416,902 - AO353_01970 0.42 -2.5 416,945 + AO353_01970 0.44 -0.2 416,946 - AO353_01970 0.44 -0.6 417,051 + AO353_01970 0.50 -0.2 417,051 + AO353_01970 0.50 -0.8 417,052 - AO353_01970 0.50 +1.0 417,092 - +0.8 417,176 - AO353_01970 0.56 -1.0 417,176 - AO353_01970 0.56 -0.2 417,176 - AO353_01970 0.56 -0.5 417,176 - AO353_01970 0.56 +1.4 417,176 - AO353_01970 0.56 -0.2 417,421 + AO353_01970 0.68 -1.1 417,421 + AO353_01970 0.68 -1.5 417,421 + AO353_01970 0.68 -1.4 417,422 - AO353_01970 0.68 +0.2 417,422 - AO353_01970 0.68 -0.5 417,435 + AO353_01970 0.69 -1.0 417,454 + AO353_01970 0.70 -0.9 417,454 + AO353_01970 0.70 -0.8 417,454 + AO353_01970 0.70 +0.8 417,561 + AO353_01970 0.75 -2.2 417,562 - AO353_01970 0.75 -0.5 417,562 - AO353_01970 0.75 +0.2 417,562 - AO353_01970 0.75 +1.1 417,562 - AO353_01970 0.75 -1.2 417,562 - AO353_01970 0.75 -0.8 417,642 + AO353_01970 0.79 -1.5 417,643 - AO353_01970 0.79 -2.7 417,643 - AO353_01970 0.79 -1.5 417,643 - AO353_01970 0.79 +0.3 417,643 - AO353_01970 0.79 -0.6 417,643 - AO353_01970 0.79 -0.6 417,662 + AO353_01970 0.80 -1.8 417,663 - AO353_01970 0.80 +0.8 417,696 + AO353_01970 0.82 -2.5 417,696 + AO353_01970 0.82 -1.1 417,696 + AO353_01970 0.82 -1.5 417,697 - AO353_01970 0.82 -0.4 417,697 - AO353_01970 0.82 -0.8 417,697 - AO353_01970 0.82 -0.8 417,697 - AO353_01970 0.82 -1.2 417,742 - AO353_01970 0.84 -0.1 417,742 - AO353_01970 0.84 -2.0 417,742 - AO353_01970 0.84 +0.0 417,748 - AO353_01970 0.84 +1.2 417,748 - AO353_01970 0.84 +0.8 417,754 + AO353_01970 0.85 +0.5 417,755 - AO353_01970 0.85 +0.5 417,755 - AO353_01970 0.85 -0.8 417,755 - AO353_01970 0.85 -0.8 417,782 + AO353_01970 0.86 +0.3 417,783 - AO353_01970 0.86 +0.2 417,801 - AO353_01970 0.87 -1.7 417,823 - AO353_01970 0.88 -0.8 417,840 + AO353_01970 0.89 -1.0 417,840 + AO353_01970 0.89 +0.3 417,841 - AO353_01970 0.89 +0.8 417,841 - -0.2 417,905 + +0.8 417,906 - -0.2 417,906 - -1.0 417,906 - +0.4 417,911 + +2.4 417,949 + +1.8 417,949 + -2.4 417,950 - -0.2 418,045 + +1.6 418,046 - +0.4 418,046 - -2.2 418,057 + +0.8 418,058 - -0.7 418,073 + +1.1 418,073 + -1.0 418,074 - +0.2 418,118 + +2.1 418,119 - +1.3 418,131 - +0.8 418,131 - +1.1 418,203 + +0.8 418,203 + +1.8 418,204 - -1.8 418,204 - -0.6 418,205 + +0.0 418,241 + -0.2 418,242 - -3.0 418,347 - AO353_01975 0.20 +1.8 418,371 - AO353_01975 0.22 -1.8 418,371 - AO353_01975 0.22 -1.5 418,371 - AO353_01975 0.22 +0.2 418,371 - AO353_01975 0.22 -1.2 418,371 - AO353_01975 0.22 -0.5 418,504 + AO353_01975 0.35 -0.8 418,504 + AO353_01975 0.35 +0.4 418,504 + AO353_01975 0.35 +1.8 418,505 - AO353_01975 0.35 -0.8 418,505 - AO353_01975 0.35 -0.5 418,505 - AO353_01975 0.35 -1.2 418,505 - AO353_01975 0.35 -1.8 418,505 - AO353_01975 0.35 +1.4 418,505 - AO353_01975 0.35 -0.2 418,507 + AO353_01975 0.36 +0.2 418,508 - AO353_01975 0.36 +0.8 418,560 + AO353_01975 0.41 -0.2 418,560 + AO353_01975 0.41 +0.8 418,570 + AO353_01975 0.42 -0.2 418,570 + AO353_01975 0.42 -0.4 418,571 - AO353_01975 0.42 +2.1 418,571 - AO353_01975 0.42 -0.8 418,571 - AO353_01975 0.42 +0.5 418,640 + AO353_01975 0.49 -1.5 418,689 + AO353_01975 0.53 -0.5 418,689 + AO353_01975 0.53 +0.8 418,689 + AO353_01975 0.53 +1.5 418,690 - AO353_01975 0.54 -1.5 418,690 - AO353_01975 0.54 -0.5 418,723 + AO353_01975 0.57 +0.2 418,739 + AO353_01975 0.58 -3.2 418,739 + AO353_01975 0.58 +0.5 418,740 - AO353_01975 0.58 -0.5 418,741 + AO353_01975 0.59 -0.6 418,741 + AO353_01975 0.59 +0.4 418,742 - AO353_01975 0.59 -0.2 418,798 - AO353_01975 0.64 -0.8 418,845 + AO353_01975 0.69 -1.8 418,845 + AO353_01975 0.69 -1.4 418,846 - AO353_01975 0.69 -0.3 418,846 - AO353_01975 0.69 +1.4 418,876 + AO353_01975 0.72 -1.5 418,877 - AO353_01975 0.72 -0.0 419,005 + AO353_01975 0.84 -2.0 419,006 - AO353_01975 0.85 -1.8 419,042 - AO353_01975 0.88 -1.7 419,052 + AO353_01975 0.89 -0.6 419,053 - AO353_01975 0.89 +0.5
Or see this region's nucleotide sequence