Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01910 and AO353_01915 are separated by 103 nucleotides AO353_01915 and AO353_01920 are separated by 267 nucleotides
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
AO353_01915: AO353_01915 - GlcG protein, at 404,394 to 404,834
_01915
AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877
_01920
Position (kb) 404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.436 kb on - strand, within AO353_01910 at 403.482 kb on + strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.604 kb on + strand, within AO353_01910 at 403.605 kb on - strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.615 kb on - strand, within AO353_01910 at 403.722 kb on + strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.022 kb on - strand, within AO353_01910 at 404.037 kb on + strand, within AO353_01910 at 404.048 kb on + strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910 at 404.187 kb on - strand at 404.246 kb on + strand at 404.246 kb on + strand at 404.272 kb on + strand at 404.273 kb on - strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.385 kb on + strand at 404.386 kb on - strand at 404.386 kb on - strand at 404.585 kb on + strand, within AO353_01915 at 404.739 kb on + strand, within AO353_01915 at 404.740 kb on - strand, within AO353_01915 at 404.823 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.905 kb on - strand at 404.949 kb on - strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.282 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 403,401 - AO353_01910 0.17 +0.8 403,401 - AO353_01910 0.17 +0.4 403,401 - AO353_01910 0.17 +1.0 403,404 + AO353_01910 0.17 -0.1 403,404 + AO353_01910 0.17 -1.5 403,405 - AO353_01910 0.17 -0.6 403,405 - AO353_01910 0.17 +0.5 403,405 - AO353_01910 0.17 +0.3 403,405 - AO353_01910 0.17 -0.2 403,436 - AO353_01910 0.20 -0.2 403,482 + AO353_01910 0.24 -0.4 403,483 - AO353_01910 0.24 -0.3 403,483 - AO353_01910 0.24 -1.8 403,483 - AO353_01910 0.24 +2.1 403,483 - AO353_01910 0.24 +0.1 403,483 - AO353_01910 0.24 -0.8 403,548 + AO353_01910 0.30 +0.5 403,548 + AO353_01910 0.30 +1.0 403,604 + AO353_01910 0.36 +1.2 403,605 - AO353_01910 0.36 -1.2 403,612 + AO353_01910 0.36 +0.1 403,612 + AO353_01910 0.36 -0.4 403,612 + AO353_01910 0.36 -0.4 403,612 + AO353_01910 0.36 -0.2 403,612 + AO353_01910 0.36 -1.2 403,612 + AO353_01910 0.36 -2.7 403,612 + AO353_01910 0.36 +0.4 403,613 - AO353_01910 0.37 +0.1 403,613 - AO353_01910 0.37 -0.0 403,613 - AO353_01910 0.37 +0.8 403,613 - AO353_01910 0.37 +0.4 403,613 - AO353_01910 0.37 -0.9 403,613 - AO353_01910 0.37 +2.1 403,613 - AO353_01910 0.37 -0.0 403,613 - AO353_01910 0.37 -0.2 403,613 - AO353_01910 0.37 -0.1 403,613 - AO353_01910 0.37 -0.5 403,613 - AO353_01910 0.37 -0.4 403,613 - AO353_01910 0.37 -0.5 403,615 - AO353_01910 0.37 +0.8 403,722 + AO353_01910 0.47 -0.2 403,723 - AO353_01910 0.47 +1.6 403,723 - AO353_01910 0.47 +0.0 403,723 - AO353_01910 0.47 -0.8 403,723 - AO353_01910 0.47 -0.0 403,723 - AO353_01910 0.47 +0.8 403,723 - AO353_01910 0.47 +0.3 403,767 - AO353_01910 0.51 -0.2 403,767 - AO353_01910 0.51 -0.8 403,801 + AO353_01910 0.54 +1.8 403,801 + AO353_01910 0.54 -0.5 403,801 + AO353_01910 0.54 +0.5 404,021 + AO353_01910 0.75 +0.2 404,021 + AO353_01910 0.75 +0.2 404,021 + AO353_01910 0.75 -0.6 404,022 - AO353_01910 0.75 +1.4 404,037 + AO353_01910 0.76 -0.7 404,048 + AO353_01910 0.77 +0.8 404,049 - AO353_01910 0.77 -0.3 404,049 - AO353_01910 0.77 +0.5 404,138 + AO353_01910 0.86 +0.5 404,138 + AO353_01910 0.86 +0.8 404,139 - AO353_01910 0.86 +0.8 404,187 - +1.4 404,246 + +0.2 404,246 + -0.5 404,272 + +0.8 404,273 - -0.2 404,332 + +0.7 404,332 + +1.5 404,332 + -1.0 404,332 + +1.4 404,332 + -0.8 404,332 + +1.4 404,332 + +0.8 404,333 - -0.8 404,333 - +0.6 404,333 - -0.2 404,333 - -0.2 404,333 - +0.6 404,333 - +0.4 404,333 - -0.7 404,333 - +0.1 404,333 - -0.8 404,333 - +1.0 404,333 - -0.5 404,333 - +1.6 404,334 + -0.6 404,334 + +0.5 404,334 + +0.6 404,334 + +0.6 404,334 + +0.8 404,335 - +1.4 404,385 + +0.2 404,386 - +0.0 404,386 - -1.1 404,585 + AO353_01915 0.43 +0.2 404,739 + AO353_01915 0.78 -2.8 404,740 - AO353_01915 0.78 -1.2 404,823 + +0.8 404,847 + -2.4 404,847 + +0.8 404,847 + -1.7 404,847 + -0.5 404,848 - +0.0 404,848 - +1.1 404,848 - +0.8 404,905 - -0.6 404,949 - -0.5 404,975 + -1.2 404,975 + +0.8 404,975 + +0.7 404,975 + -1.6 404,975 + -0.6 404,976 - +0.2 404,976 - +1.4 404,976 - +2.4 404,979 + +0.2 404,979 + -0.4 404,979 + -0.6 404,979 + -0.3 404,980 - -0.5 404,980 - -0.5 404,980 - +0.8 404,980 - -0.2 404,980 - +1.2 404,980 - +0.8 404,980 - +0.1 405,045 + +0.7 405,045 + -1.8 405,045 + +1.8 405,045 + +0.6 405,045 + -0.4 405,045 + +0.5 405,045 + +0.0 405,045 + +0.8 405,045 + +0.8 405,045 + +0.5 405,046 - +2.0 405,046 - -0.3 405,046 - -1.0 405,046 - +0.3 405,046 - +0.2 405,046 - -0.5 405,046 - +0.6 405,046 - +0.4 405,202 - +0.0 405,202 - -2.0 405,202 - +1.8 405,282 + AO353_01920 0.10 -0.5 405,363 + AO353_01920 0.15 +0.6 405,363 + AO353_01920 0.15 +0.6 405,363 + AO353_01920 0.15 +0.5 405,523 - AO353_01920 0.24 +1.8 405,523 - AO353_01920 0.24 -0.3 405,543 + AO353_01920 0.25 -0.1 405,543 + AO353_01920 0.25 -0.0 405,543 + AO353_01920 0.25 +0.8 405,543 + AO353_01920 0.25 +0.4 405,543 + AO353_01920 0.25 +0.2 405,543 + AO353_01920 0.25 +2.2 405,543 + AO353_01920 0.25 -1.5 405,543 + AO353_01920 0.25 -0.8 405,543 + AO353_01920 0.25 +0.1 405,543 + AO353_01920 0.25 +0.1 405,543 + AO353_01920 0.25 -1.5 405,544 - AO353_01920 0.25 -0.8 405,544 - AO353_01920 0.25 +0.5 405,544 - AO353_01920 0.25 +1.2 405,544 - AO353_01920 0.25 +0.3 405,544 - AO353_01920 0.25 +0.4 405,544 - AO353_01920 0.25 +0.5 405,544 - AO353_01920 0.25 +0.4 405,544 - AO353_01920 0.25 +0.0 405,633 + AO353_01920 0.30 +0.4 405,633 + AO353_01920 0.30 -0.2 405,633 + AO353_01920 0.30 -0.0 405,634 - AO353_01920 0.30 +0.2 405,634 - AO353_01920 0.30 -0.2 405,634 - AO353_01920 0.30 +1.8 405,634 - AO353_01920 0.30 +0.9
Or see this region's nucleotide sequence