Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00685 and AO353_00690 are separated by 146 nucleotides AO353_00690 and AO353_00695 are separated by 3 nucleotides AO353_00695 and AO353_00700 are separated by 490 nucleotides AO353_00700 and AO353_00705 are separated by 136 nucleotides
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338
_00690
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
AO353_00700: AO353_00700 - Cro/Cl family transcriptional regulator, at 149,533 to 149,847
_00700
AO353_00705: AO353_00705 - drug:proton antiporter, at 149,984 to 150,352
_00705
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 146.512 kb on + strand at 146.521 kb on + strand at 146.529 kb on + strand at 146.530 kb on - strand at 146.579 kb on + strand at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.836 kb on - strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.984 kb on - strand, within AO353_00690 at 147.092 kb on + strand, within AO353_00690 at 147.100 kb on - strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.212 kb on + strand, within AO353_00690 at 147.301 kb on - strand at 147.301 kb on - strand at 147.337 kb on - strand at 147.337 kb on - strand at 147.439 kb on + strand at 147.439 kb on + strand at 147.440 kb on - strand at 147.451 kb on - strand at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.605 kb on + strand, within AO353_00695 at 147.606 kb on - strand, within AO353_00695 at 147.644 kb on - strand, within AO353_00695 at 147.737 kb on + strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.328 kb on - strand, within AO353_00695 at 148.382 kb on + strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.514 kb on - strand, within AO353_00695 at 148.588 kb on + strand, within AO353_00695 at 148.621 kb on + strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.723 kb on + strand, within AO353_00695 at 148.934 kb on - strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.029 kb on + strand at 149.030 kb on - strand at 149.071 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.172 kb on - strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.255 kb on - strand at 149.255 kb on - strand at 149.271 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.391 kb on - strand at 149.416 kb on + strand at 149.416 kb on + strand at 149.432 kb on + strand at 149.433 kb on - strand at 149.440 kb on - strand at 149.440 kb on - strand at 149.589 kb on + strand, within AO353_00700 at 149.589 kb on + strand, within AO353_00700 at 149.590 kb on - strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.761 kb on + strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.777 kb on + strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.877 kb on + strand at 149.877 kb on + strand at 149.877 kb on + strand at 149.888 kb on + strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.946 kb on - strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 146,512 + +1.2 146,521 + -1.1 146,529 + +0.7 146,530 - +0.2 146,579 + +1.2 146,721 + AO353_00690 0.19 -0.2 146,721 + AO353_00690 0.19 +0.5 146,721 + AO353_00690 0.19 -1.1 146,836 - AO353_00690 0.34 +0.7 146,874 + AO353_00690 0.39 +0.7 146,874 + AO353_00690 0.39 -0.2 146,874 + AO353_00690 0.39 -1.1 146,875 - AO353_00690 0.39 -2.3 146,875 - AO353_00690 0.39 -0.3 146,984 - AO353_00690 0.53 -0.3 147,092 + AO353_00690 0.67 -1.3 147,100 - AO353_00690 0.69 -0.0 147,204 + AO353_00690 0.82 +2.0 147,204 + AO353_00690 0.82 +0.1 147,204 + AO353_00690 0.82 -0.2 147,204 + AO353_00690 0.82 -0.5 147,205 - AO353_00690 0.82 -1.1 147,205 - AO353_00690 0.82 +0.4 147,212 + AO353_00690 0.83 -0.1 147,301 - +1.4 147,301 - -0.3 147,337 - +0.4 147,337 - -0.7 147,439 + -1.5 147,439 + +1.2 147,440 - -0.9 147,451 - -0.4 147,585 + AO353_00695 0.14 +0.1 147,585 + AO353_00695 0.14 +0.1 147,585 + AO353_00695 0.14 -0.9 147,585 + AO353_00695 0.14 -0.1 147,585 + AO353_00695 0.14 -0.1 147,585 + AO353_00695 0.14 +0.5 147,585 + AO353_00695 0.14 -1.2 147,585 + AO353_00695 0.14 -0.2 147,586 - AO353_00695 0.14 +0.9 147,586 - AO353_00695 0.14 +0.7 147,586 - AO353_00695 0.14 -2.5 147,586 - AO353_00695 0.14 +0.3 147,605 + AO353_00695 0.15 -0.3 147,606 - AO353_00695 0.16 -0.1 147,644 - AO353_00695 0.18 -0.6 147,737 + AO353_00695 0.23 -0.7 147,738 - AO353_00695 0.23 -2.1 147,738 - AO353_00695 0.23 +0.1 147,738 - AO353_00695 0.23 -1.7 147,738 - AO353_00695 0.23 -1.3 148,216 + AO353_00695 0.51 -0.1 148,216 + AO353_00695 0.51 -1.6 148,216 + AO353_00695 0.51 -1.4 148,216 + AO353_00695 0.51 -1.2 148,216 + AO353_00695 0.51 -0.1 148,216 + AO353_00695 0.51 -0.3 148,216 + AO353_00695 0.51 -2.8 148,216 + AO353_00695 0.51 -0.9 148,216 + AO353_00695 0.51 -0.7 148,216 + AO353_00695 0.51 +0.5 148,216 + AO353_00695 0.51 -0.3 148,217 - AO353_00695 0.51 -2.2 148,217 - AO353_00695 0.51 -0.1 148,217 - AO353_00695 0.51 +0.4 148,217 - AO353_00695 0.51 -1.2 148,217 - AO353_00695 0.51 -1.3 148,217 - AO353_00695 0.51 -3.0 148,217 - AO353_00695 0.51 -0.3 148,328 - AO353_00695 0.58 -1.2 148,382 + AO353_00695 0.61 -1.3 148,390 - AO353_00695 0.62 -1.3 148,390 - AO353_00695 0.62 +0.7 148,390 - AO353_00695 0.62 +0.2 148,514 - AO353_00695 0.69 -0.0 148,588 + AO353_00695 0.73 +1.5 148,621 + AO353_00695 0.75 -2.1 148,622 - AO353_00695 0.75 -1.3 148,622 - AO353_00695 0.75 -1.1 148,622 - AO353_00695 0.75 +0.1 148,622 - AO353_00695 0.75 -0.9 148,622 - AO353_00695 0.75 +1.1 148,723 + AO353_00695 0.81 -0.9 148,934 - +0.7 148,966 + -0.9 148,966 + -0.7 148,966 + +0.2 148,966 + +0.3 148,966 + -2.7 148,966 + -0.9 148,966 + +1.2 148,966 + -0.2 148,966 + -0.4 148,966 + -1.8 148,967 - -1.1 148,967 - +1.2 148,967 - -1.1 148,967 - +0.1 148,970 + +0.3 148,970 + -1.7 148,970 + +0.1 148,970 + -1.0 148,970 + +0.2 148,970 + +0.7 148,971 - -3.0 148,971 - +0.2 148,971 - -0.7 148,971 - +0.2 148,971 - -0.9 148,971 - +0.2 149,016 + -1.7 149,016 + +0.7 149,016 + -0.7 149,017 - -2.1 149,017 - +0.5 149,017 - +1.2 149,029 + -1.7 149,030 - +0.8 149,071 + -0.3 149,171 + -0.3 149,171 + -0.2 149,171 + -1.5 149,172 - -0.3 149,254 + -0.5 149,254 + -1.5 149,254 + -0.6 149,255 - +0.7 149,255 - -0.9 149,271 + +0.7 149,390 + +0.1 149,390 + -1.1 149,390 + +2.2 149,390 + -0.3 149,390 + -0.1 149,390 + +0.7 149,391 - +0.4 149,416 + -0.7 149,416 + -1.3 149,432 + +0.7 149,433 - -1.9 149,440 - +0.1 149,440 - +1.4 149,589 + AO353_00700 0.18 -1.0 149,589 + AO353_00700 0.18 -0.1 149,590 - AO353_00700 0.18 +1.0 149,659 + AO353_00700 0.40 +2.1 149,659 + AO353_00700 0.40 +1.0 149,659 + AO353_00700 0.40 +0.7 149,659 + AO353_00700 0.40 -0.5 149,659 + AO353_00700 0.40 +0.7 149,659 + AO353_00700 0.40 -1.3 149,659 + AO353_00700 0.40 -1.3 149,659 + AO353_00700 0.40 +0.7 149,659 + AO353_00700 0.40 +0.5 149,659 + AO353_00700 0.40 -0.3 149,659 + AO353_00700 0.40 -0.8 149,659 + AO353_00700 0.40 +1.9 149,660 - AO353_00700 0.40 +1.2 149,660 - AO353_00700 0.40 +1.9 149,660 - AO353_00700 0.40 -0.9 149,660 - AO353_00700 0.40 -0.9 149,660 - AO353_00700 0.40 +2.5 149,660 - AO353_00700 0.40 +1.1 149,660 - AO353_00700 0.40 -1.7 149,660 - AO353_00700 0.40 +3.4 149,660 - AO353_00700 0.40 +0.4 149,660 - AO353_00700 0.40 +0.7 149,660 - AO353_00700 0.40 +0.8 149,660 - AO353_00700 0.40 +0.3 149,660 - AO353_00700 0.40 -0.1 149,660 - AO353_00700 0.40 +1.2 149,660 - AO353_00700 0.40 +1.6 149,660 - AO353_00700 0.40 +0.5 149,660 - AO353_00700 0.40 +1.2 149,660 - AO353_00700 0.40 -0.3 149,761 + AO353_00700 0.72 +0.4 149,762 - AO353_00700 0.73 +1.2 149,762 - AO353_00700 0.73 -0.1 149,777 + AO353_00700 0.77 +1.1 149,778 - AO353_00700 0.78 +1.2 149,778 - AO353_00700 0.78 +1.3 149,778 - AO353_00700 0.78 +0.2 149,877 + +1.4 149,877 + +1.5 149,877 + -0.5 149,888 + -0.4 149,889 - +1.3 149,889 - +0.1 149,889 - +0.7 149,889 - -0.3 149,889 - +0.0 149,916 + +1.4 149,916 + +0.3 149,916 + -1.3 149,946 - +0.2 149,999 + +0.7 149,999 + -0.4 149,999 + -0.3 149,999 + +0.7 149,999 + +2.5 149,999 + +0.2 150,000 - +1.4 150,000 - -1.5 150,000 - +1.1 150,000 - -1.9 150,011 + -0.9 150,011 + -1.3 150,012 - -0.9
Or see this region's nucleotide sequence