Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00455 and AO353_00460 are separated by 197 nucleotides AO353_00460 and AO353_00465 are separated by 252 nucleotides AO353_00465 and AO353_00470 are separated by 10 nucleotides
AO353_00455: AO353_00455 - beta-hexosaminidase, at 92,743 to 93,753
_00455
AO353_00460: AO353_00460 - TetR family transcriptional regulator, at 93,951 to 94,658
_00460
AO353_00465: AO353_00465 - LexA family transcriptional regulator, at 94,911 to 95,519
_00465
AO353_00470: AO353_00470 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 95,530 to 96,003
_00470
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 93.037 kb on + strand, within AO353_00455 at 93.038 kb on - strand, within AO353_00455 at 93.107 kb on + strand, within AO353_00455 at 93.467 kb on + strand, within AO353_00455 at 93.468 kb on - strand, within AO353_00455 at 93.840 kb on - strand at 93.843 kb on - strand at 93.864 kb on - strand at 93.910 kb on + strand at 93.924 kb on + strand at 93.924 kb on + strand at 93.924 kb on + strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.952 kb on + strand at 93.953 kb on - strand at 93.953 kb on - strand at 93.953 kb on - strand at 93.953 kb on - strand at 94.209 kb on - strand, within AO353_00460 at 94.241 kb on - strand, within AO353_00460 at 94.241 kb on - strand, within AO353_00460 at 94.252 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.335 kb on - strand, within AO353_00460 at 94.693 kb on + strand at 94.693 kb on + strand at 94.693 kb on + strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.756 kb on + strand at 94.756 kb on + strand at 94.757 kb on - strand at 94.757 kb on - strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.763 kb on - strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.870 kb on - strand at 94.871 kb on + strand at 94.871 kb on + strand at 94.873 kb on + strand at 94.873 kb on + strand at 95.518 kb on - strand at 95.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 93,037 + AO353_00455 0.29 -0.3 93,038 - AO353_00455 0.29 +0.7 93,107 + AO353_00455 0.36 +1.5 93,467 + AO353_00455 0.72 +1.7 93,468 - AO353_00455 0.72 +0.5 93,840 - +1.1 93,843 - +0.4 93,864 - +0.7 93,910 + +0.7 93,924 + -0.1 93,924 + -1.3 93,924 + -1.7 93,925 - +0.1 93,925 - +0.0 93,925 - +0.7 93,925 - +0.7 93,925 - -2.0 93,925 - -1.5 93,952 + -0.1 93,953 - +0.3 93,953 - -0.5 93,953 - -0.5 93,953 - -0.9 94,209 - AO353_00460 0.36 -0.9 94,241 - AO353_00460 0.41 +1.7 94,241 - AO353_00460 0.41 +0.7 94,252 - AO353_00460 0.43 +0.1 94,262 - AO353_00460 0.44 -1.7 94,262 - AO353_00460 0.44 -0.9 94,262 - AO353_00460 0.44 -0.8 94,262 - AO353_00460 0.44 -0.4 94,335 - AO353_00460 0.54 +0.7 94,693 + +0.1 94,693 + -0.9 94,693 + -1.3 94,694 - -0.5 94,694 - +0.9 94,694 - +0.3 94,694 - -0.9 94,752 + +2.7 94,752 + +0.8 94,752 + +0.6 94,752 + +1.2 94,752 + +0.4 94,752 + +0.2 94,752 + -0.1 94,752 + -1.3 94,752 + +0.7 94,752 + +0.4 94,753 - +0.1 94,753 - +0.5 94,753 - +1.2 94,753 - +0.1 94,753 - +0.5 94,753 - +0.7 94,753 - -0.8 94,756 + +0.4 94,756 + -1.9 94,757 - -0.3 94,757 - +0.7 94,762 + +1.1 94,762 + -0.3 94,762 + -1.2 94,762 + +1.7 94,762 + -0.3 94,762 + +0.2 94,762 + +0.4 94,763 - +0.7 94,788 + +0.1 94,788 + +0.7 94,788 + +0.1 94,788 + -3.0 94,788 + +0.7 94,789 - +0.7 94,789 - +0.4 94,789 - -2.9 94,812 + -0.5 94,813 - -1.3 94,813 - +0.9 94,813 - -1.3 94,836 + -0.3 94,836 + +0.7 94,836 + +1.2 94,870 - -0.6 94,871 + +1.2 94,871 + -2.7 94,873 + +1.2 94,873 + +0.1 95,518 - +0.7 95,530 - -1.3
Or see this region's nucleotide sequence