Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt minD and minE are separated by 14 nucleotides minE and Synpcc7942_0898 overlap by 4 nucleotides Synpcc7942_0898 and tRNA-Thr are separated by 13 nucleotides tRNA-Thr and Synpcc7942_0899 are separated by 95 nucleotides
Synpcc7942_0896: minD - septum site-determining protein MinD, at 906,832 to 907,638
minD
Synpcc7942_0897: minE - cell division topological specificity factor MinE, at 907,653 to 907,928
minE
Synpcc7942_0898: Synpcc7942_0898 - ferredoxin like protein, at 907,925 to 908,317
_0898
Synpcc7942_R0041: tRNA-Thr - tRNA-Thr, at 908,331 to 908,402
tRNA-Thr
Synpcc7942_0899: Synpcc7942_0899 - hypothetical protein, at 908,498 to 909,295
_0899
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 906.968 kb on - strand, within minD at 907.010 kb on + strand, within minD at 907.053 kb on + strand, within minD at 907.060 kb on + strand, within minD at 907.061 kb on - strand, within minD at 907.091 kb on - strand, within minD at 907.096 kb on + strand at 907.104 kb on - strand, within minD at 907.132 kb on - strand, within minD at 907.143 kb on + strand, within minD at 907.145 kb on + strand, within minD at 907.218 kb on - strand, within minD at 907.251 kb on - strand, within minD at 907.284 kb on - strand, within minD at 907.286 kb on - strand, within minD at 907.314 kb on - strand, within minD at 907.452 kb on + strand, within minD at 907.469 kb on + strand, within minD at 907.532 kb on - strand, within minD at 907.547 kb on - strand, within minD at 907.555 kb on + strand, within minD at 907.579 kb on - strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.925 kb on - strand at 907.933 kb on + strand at 908.045 kb on + strand, within Synpcc7942_0898 at 908.045 kb on + strand, within Synpcc7942_0898 at 908.053 kb on - strand, within Synpcc7942_0898 at 908.059 kb on - strand, within Synpcc7942_0898 at 908.097 kb on + strand, within Synpcc7942_0898 at 908.114 kb on + strand, within Synpcc7942_0898 at 908.128 kb on + strand, within Synpcc7942_0898 at 908.134 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.171 kb on - strand, within Synpcc7942_0898 at 908.179 kb on - strand, within Synpcc7942_0898 at 908.184 kb on - strand, within Synpcc7942_0898 at 908.211 kb on + strand, within Synpcc7942_0898 at 908.219 kb on - strand, within Synpcc7942_0898 at 908.243 kb on + strand, within Synpcc7942_0898 at 908.272 kb on - strand, within Synpcc7942_0898 at 908.311 kb on + strand at 908.415 kb on - strand at 908.457 kb on + strand at 908.503 kb on - strand at 908.505 kb on + strand at 908.508 kb on + strand at 908.521 kb on - strand at 908.531 kb on - strand at 908.533 kb on + strand at 908.533 kb on + strand at 908.544 kb on + strand at 908.547 kb on - strand at 908.549 kb on - strand at 908.563 kb on + strand at 908.575 kb on + strand at 908.591 kb on - strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.696 kb on + strand, within Synpcc7942_0899 at 908.755 kb on + strand, within Synpcc7942_0899 at 908.758 kb on + strand, within Synpcc7942_0899 at 908.766 kb on - strand, within Synpcc7942_0899 at 908.846 kb on - strand, within Synpcc7942_0899 at 908.860 kb on + strand, within Synpcc7942_0899 at 908.865 kb on + strand, within Synpcc7942_0899 at 908.868 kb on - strand, within Synpcc7942_0899 at 908.876 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899 at 908.938 kb on - strand, within Synpcc7942_0899 at 908.955 kb on - strand, within Synpcc7942_0899 at 909.117 kb on + strand, within Synpcc7942_0899 at 909.117 kb on + strand, within Synpcc7942_0899 at 909.120 kb on - strand, within Synpcc7942_0899 at 909.122 kb on + strand, within Synpcc7942_0899 at 909.122 kb on + strand, within Synpcc7942_0899 at 909.125 kb on - strand, within Synpcc7942_0899 at 909.125 kb on - strand, within Synpcc7942_0899 at 909.150 kb on + strand, within Synpcc7942_0899 at 909.165 kb on - strand, within Synpcc7942_0899 at 909.179 kb on - strand, within Synpcc7942_0899 at 909.186 kb on - strand, within Synpcc7942_0899 at 909.213 kb on + strand, within Synpcc7942_0899 at 909.229 kb on + strand at 909.254 kb on + strand at 909.254 kb on + strand at 909.254 kb on + strand at 909.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 906,968 - minD Synpcc7942_0896 0.17 -2.2 907,010 + minD Synpcc7942_0896 0.22 -1.2 907,053 + minD Synpcc7942_0896 0.27 -0.2 907,060 + minD Synpcc7942_0896 0.28 -1.8 907,061 - minD Synpcc7942_0896 0.28 -0.2 907,091 - minD Synpcc7942_0896 0.32 -1.9 907,096 + -0.2 907,104 - minD Synpcc7942_0896 0.34 -0.2 907,132 - minD Synpcc7942_0896 0.37 -1.5 907,143 + minD Synpcc7942_0896 0.39 -0.2 907,145 + minD Synpcc7942_0896 0.39 -3.3 907,218 - minD Synpcc7942_0896 0.48 -0.2 907,251 - minD Synpcc7942_0896 0.52 +0.1 907,284 - minD Synpcc7942_0896 0.56 -0.9 907,286 - minD Synpcc7942_0896 0.56 -1.8 907,314 - minD Synpcc7942_0896 0.60 +0.6 907,452 + minD Synpcc7942_0896 0.77 -0.5 907,469 + minD Synpcc7942_0896 0.79 -1.8 907,532 - minD Synpcc7942_0896 0.87 +0.8 907,547 - minD Synpcc7942_0896 0.89 -0.8 907,555 + minD Synpcc7942_0896 0.90 -2.8 907,579 - -2.2 907,582 + -0.2 907,582 + -2.8 907,582 + -0.2 907,582 + -0.7 907,582 + +0.2 907,582 + -0.8 907,582 + +0.1 907,590 - -0.2 907,590 - -2.5 907,590 - -3.3 907,590 - -2.4 907,925 - -1.2 907,933 + +1.2 908,045 + Synpcc7942_0898 0.31 +0.6 908,045 + Synpcc7942_0898 0.31 +0.6 908,053 - Synpcc7942_0898 0.33 +3.0 908,059 - Synpcc7942_0898 0.34 +1.4 908,097 + Synpcc7942_0898 0.44 +0.5 908,114 + Synpcc7942_0898 0.48 -0.2 908,128 + Synpcc7942_0898 0.52 +0.9 908,134 + Synpcc7942_0898 0.53 +1.3 908,154 + Synpcc7942_0898 0.58 -1.2 908,154 + Synpcc7942_0898 0.58 -0.8 908,171 - Synpcc7942_0898 0.63 +0.2 908,179 - Synpcc7942_0898 0.65 +0.6 908,184 - Synpcc7942_0898 0.66 +1.1 908,211 + Synpcc7942_0898 0.73 +0.5 908,219 - Synpcc7942_0898 0.75 -2.8 908,243 + Synpcc7942_0898 0.81 +2.6 908,272 - Synpcc7942_0898 0.88 +0.8 908,311 + -1.8 908,415 - -1.5 908,457 + -0.8 908,503 - -0.4 908,505 + +1.7 908,508 + -0.1 908,521 - +0.4 908,531 - -1.3 908,533 + +1.1 908,533 + -0.6 908,544 + -0.6 908,547 - -0.4 908,549 - -0.3 908,563 + -0.4 908,575 + -1.2 908,591 - Synpcc7942_0899 0.12 +1.2 908,681 + Synpcc7942_0899 0.23 +1.1 908,681 + Synpcc7942_0899 0.23 +2.4 908,681 + Synpcc7942_0899 0.23 -0.9 908,696 + Synpcc7942_0899 0.25 +0.1 908,755 + Synpcc7942_0899 0.32 +2.5 908,758 + Synpcc7942_0899 0.33 -0.9 908,766 - Synpcc7942_0899 0.34 -2.2 908,846 - Synpcc7942_0899 0.44 +0.1 908,860 + Synpcc7942_0899 0.45 +1.3 908,865 + Synpcc7942_0899 0.46 +0.7 908,868 - Synpcc7942_0899 0.46 -0.0 908,876 + Synpcc7942_0899 0.47 -1.2 908,922 + Synpcc7942_0899 0.53 -0.2 908,922 + Synpcc7942_0899 0.53 +0.6 908,922 + Synpcc7942_0899 0.53 +0.1 908,938 - Synpcc7942_0899 0.55 -1.2 908,955 - Synpcc7942_0899 0.57 +0.5 909,117 + Synpcc7942_0899 0.78 +0.6 909,117 + Synpcc7942_0899 0.78 +2.3 909,120 - Synpcc7942_0899 0.78 -0.0 909,122 + Synpcc7942_0899 0.78 +0.7 909,122 + Synpcc7942_0899 0.78 +1.4 909,125 - Synpcc7942_0899 0.79 +1.2 909,125 - Synpcc7942_0899 0.79 -1.8 909,150 + Synpcc7942_0899 0.82 -0.6 909,165 - Synpcc7942_0899 0.84 -0.7 909,179 - Synpcc7942_0899 0.85 -0.6 909,186 - Synpcc7942_0899 0.86 -0.5 909,213 + Synpcc7942_0899 0.90 -1.2 909,229 + -0.2 909,254 + +2.2 909,254 + -2.6 909,254 + +1.0 909,269 + +0.3
Or see this region's nucleotide sequence