Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_671 and Pf1N1B4_672 overlap by 4 nucleotides Pf1N1B4_672 and Pf1N1B4_673 overlap by 4 nucleotides
Pf1N1B4_671 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 767,032 to 768,576
_671
Pf1N1B4_672 - FIG00955538: hypothetical protein, at 768,573 to 769,736
_672
Pf1N1B4_673 - MoxR-like ATPases, at 769,733 to 770,734
_673
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1 at 767.650 kb on + strand, within Pf1N1B4_671 at 767.650 kb on + strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.651 kb on - strand, within Pf1N1B4_671 at 767.683 kb on + strand, within Pf1N1B4_671 at 767.683 kb on + strand, within Pf1N1B4_671 at 767.684 kb on - strand at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.684 kb on - strand, within Pf1N1B4_671 at 767.859 kb on + strand, within Pf1N1B4_671 at 767.860 kb on - strand, within Pf1N1B4_671 at 768.083 kb on + strand, within Pf1N1B4_671 at 768.619 kb on + strand at 768.620 kb on - strand at 768.639 kb on + strand at 768.640 kb on - strand at 768.640 kb on - strand at 768.645 kb on + strand at 768.714 kb on + strand at 769.051 kb on - strand, within Pf1N1B4_672 at 769.051 kb on - strand, within Pf1N1B4_672 at 769.077 kb on + strand, within Pf1N1B4_672 at 769.078 kb on - strand, within Pf1N1B4_672 at 769.078 kb on - strand, within Pf1N1B4_672 at 769.243 kb on - strand, within Pf1N1B4_672 at 769.267 kb on - strand, within Pf1N1B4_672 at 769.305 kb on - strand, within Pf1N1B4_672 at 769.732 kb on + strand at 770.031 kb on - strand, within Pf1N1B4_673 at 770.077 kb on + strand, within Pf1N1B4_673 at 770.078 kb on - strand, within Pf1N1B4_673 at 770.078 kb on - strand, within Pf1N1B4_673 at 770.246 kb on + strand, within Pf1N1B4_673 at 770.247 kb on - strand, within Pf1N1B4_673 at 770.466 kb on - strand, within Pf1N1B4_673 at 770.548 kb on - strand, within Pf1N1B4_673 at 770.548 kb on - strand, within Pf1N1B4_673
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 767,650 + Pf1N1B4_671 0.40 -0.6 767,650 + Pf1N1B4_671 0.40 +0.8 767,651 - Pf1N1B4_671 0.40 +0.2 767,651 - Pf1N1B4_671 0.40 +0.2 767,651 - Pf1N1B4_671 0.40 -0.5 767,683 + Pf1N1B4_671 0.42 -0.0 767,683 + Pf1N1B4_671 0.42 +0.6 767,684 - +1.0 767,684 - Pf1N1B4_671 0.42 -0.6 767,684 - Pf1N1B4_671 0.42 -0.0 767,684 - Pf1N1B4_671 0.42 +1.2 767,684 - Pf1N1B4_671 0.42 -1.6 767,684 - Pf1N1B4_671 0.42 -1.0 767,859 + Pf1N1B4_671 0.54 -1.0 767,860 - Pf1N1B4_671 0.54 -1.0 768,083 + Pf1N1B4_671 0.68 -1.4 768,619 + +0.8 768,620 - +0.1 768,639 + -0.0 768,640 - +0.5 768,640 - +1.2 768,645 + +0.5 768,714 + -0.0 769,051 - Pf1N1B4_672 0.41 -0.6 769,051 - Pf1N1B4_672 0.41 -0.0 769,077 + Pf1N1B4_672 0.43 -1.6 769,078 - Pf1N1B4_672 0.43 -0.6 769,078 - Pf1N1B4_672 0.43 -2.0 769,243 - Pf1N1B4_672 0.58 -1.0 769,267 - Pf1N1B4_672 0.60 +1.0 769,305 - Pf1N1B4_672 0.63 +0.0 769,732 + +0.4 770,031 - Pf1N1B4_673 0.30 +1.1 770,077 + Pf1N1B4_673 0.34 +1.0 770,078 - Pf1N1B4_673 0.34 +0.8 770,078 - Pf1N1B4_673 0.34 +0.3 770,246 + Pf1N1B4_673 0.51 -0.0 770,247 - Pf1N1B4_673 0.51 +0.4 770,466 - Pf1N1B4_673 0.73 +1.0 770,548 - Pf1N1B4_673 0.81 -0.0 770,548 - Pf1N1B4_673 0.81 -1.0
Or see this region's nucleotide sequence