Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5045 and Pf1N1B4_5046 overlap by 1 nucleotides Pf1N1B4_5046 and Pf1N1B4_5047 are separated by 184 nucleotides Pf1N1B4_5047 and Pf1N1B4_5048 are separated by 246 nucleotides
Pf1N1B4_5045 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 5,590,273 to 5,590,878
_5045
Pf1N1B4_5046 - Copper metallochaperone, bacterial analog of Cox17 protein, at 5,590,878 to 5,591,351
_5046
Pf1N1B4_5047 - Integral membrane protein TerC, at 5,591,536 to 5,592,507
_5047
Pf1N1B4_5048 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 5,592,754 to 5,593,680
_5048
Position (kb) 5591
5592
5593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5590.672 kb on + strand, within Pf1N1B4_5045 at 5590.750 kb on + strand, within Pf1N1B4_5045 at 5590.750 kb on + strand, within Pf1N1B4_5045 at 5590.750 kb on + strand, within Pf1N1B4_5045 at 5590.750 kb on + strand, within Pf1N1B4_5045 at 5590.750 kb on + strand at 5590.751 kb on - strand, within Pf1N1B4_5045 at 5590.751 kb on - strand, within Pf1N1B4_5045 at 5590.751 kb on - strand, within Pf1N1B4_5045 at 5590.890 kb on + strand at 5590.890 kb on + strand at 5590.890 kb on + strand at 5590.891 kb on - strand at 5590.891 kb on - strand at 5590.891 kb on - strand at 5590.901 kb on + strand at 5590.901 kb on + strand at 5590.901 kb on + strand at 5590.901 kb on + strand at 5590.901 kb on + strand at 5590.901 kb on + strand at 5590.902 kb on - strand at 5590.904 kb on + strand at 5590.905 kb on - strand at 5590.905 kb on - strand at 5591.974 kb on + strand at 5591.975 kb on - strand, within Pf1N1B4_5047 at 5592.048 kb on + strand, within Pf1N1B4_5047 at 5592.059 kb on + strand, within Pf1N1B4_5047 at 5592.071 kb on + strand, within Pf1N1B4_5047 at 5592.295 kb on + strand, within Pf1N1B4_5047 at 5592.356 kb on + strand, within Pf1N1B4_5047 at 5592.612 kb on - strand at 5592.661 kb on - strand at 5592.661 kb on - strand at 5592.865 kb on + strand, within Pf1N1B4_5048 at 5592.917 kb on - strand at 5592.917 kb on - strand, within Pf1N1B4_5048 at 5592.917 kb on - strand, within Pf1N1B4_5048
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,590,672 + Pf1N1B4_5045 0.66 -0.1 5,590,750 + Pf1N1B4_5045 0.79 +1.4 5,590,750 + Pf1N1B4_5045 0.79 +0.0 5,590,750 + Pf1N1B4_5045 0.79 +0.2 5,590,750 + Pf1N1B4_5045 0.79 -1.1 5,590,750 + +1.0 5,590,751 - Pf1N1B4_5045 0.79 +0.0 5,590,751 - Pf1N1B4_5045 0.79 -0.4 5,590,751 - Pf1N1B4_5045 0.79 -1.3 5,590,890 + +1.0 5,590,890 + -2.4 5,590,890 + -0.3 5,590,891 - +0.4 5,590,891 - +0.8 5,590,891 - -0.6 5,590,901 + +1.4 5,590,901 + -0.3 5,590,901 + +0.4 5,590,901 + +0.4 5,590,901 + +0.9 5,590,901 + +0.3 5,590,902 - +1.2 5,590,904 + +1.3 5,590,905 - +1.8 5,590,905 - +0.0 5,591,974 + +0.4 5,591,975 - Pf1N1B4_5047 0.45 -0.9 5,592,048 + Pf1N1B4_5047 0.53 -0.3 5,592,059 + Pf1N1B4_5047 0.54 -0.3 5,592,071 + Pf1N1B4_5047 0.55 +0.8 5,592,295 + Pf1N1B4_5047 0.78 +0.0 5,592,356 + Pf1N1B4_5047 0.84 -1.3 5,592,612 - -0.1 5,592,661 - +0.2 5,592,661 - +1.0 5,592,865 + Pf1N1B4_5048 0.12 -0.6 5,592,917 - -0.6 5,592,917 - Pf1N1B4_5048 0.18 -0.6 5,592,917 - Pf1N1B4_5048 0.18 -0.6
Or see this region's nucleotide sequence