Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4198 and Pf1N1B4_4199 are separated by 24 nucleotides Pf1N1B4_4199 and Pf1N1B4_4200 are separated by 126 nucleotides
Pf1N1B4_4198 - 4-hydroxybenzoate transporter, at 4,649,037 to 4,650,374
_4198
Pf1N1B4_4199 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 4,650,399 to 4,651,661
_4199
Pf1N1B4_4200 - PhaK-like protein, at 4,651,788 to 4,653,035
_4200
Position (kb) 4650
4651
4652 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4649.692 kb on + strand, within Pf1N1B4_4198 at 4649.826 kb on + strand, within Pf1N1B4_4198 at 4649.826 kb on + strand, within Pf1N1B4_4198 at 4649.850 kb on + strand, within Pf1N1B4_4198 at 4649.859 kb on - strand, within Pf1N1B4_4198 at 4650.558 kb on + strand, within Pf1N1B4_4199 at 4650.559 kb on - strand, within Pf1N1B4_4199 at 4651.183 kb on - strand, within Pf1N1B4_4199 at 4651.183 kb on - strand, within Pf1N1B4_4199 at 4651.185 kb on + strand, within Pf1N1B4_4199 at 4651.185 kb on + strand, within Pf1N1B4_4199 at 4651.185 kb on + strand, within Pf1N1B4_4199 at 4651.503 kb on + strand, within Pf1N1B4_4199 at 4651.504 kb on - strand, within Pf1N1B4_4199 at 4651.569 kb on + strand at 4651.783 kb on + strand at 4651.784 kb on - strand at 4651.912 kb on - strand at 4652.215 kb on + strand, within Pf1N1B4_4200 at 4652.215 kb on + strand, within Pf1N1B4_4200 at 4652.216 kb on - strand at 4652.298 kb on + strand, within Pf1N1B4_4200 at 4652.484 kb on + strand, within Pf1N1B4_4200 at 4652.485 kb on - strand, within Pf1N1B4_4200 at 4652.485 kb on - strand, within Pf1N1B4_4200 at 4652.636 kb on + strand, within Pf1N1B4_4200 at 4652.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,649,692 + Pf1N1B4_4198 0.49 -0.1 4,649,826 + Pf1N1B4_4198 0.59 +0.0 4,649,826 + Pf1N1B4_4198 0.59 +0.2 4,649,850 + Pf1N1B4_4198 0.61 -1.4 4,649,859 - Pf1N1B4_4198 0.61 +0.3 4,650,558 + Pf1N1B4_4199 0.13 +1.0 4,650,559 - Pf1N1B4_4199 0.13 +0.1 4,651,183 - Pf1N1B4_4199 0.62 -1.1 4,651,183 - Pf1N1B4_4199 0.62 -1.4 4,651,185 + Pf1N1B4_4199 0.62 -1.6 4,651,185 + Pf1N1B4_4199 0.62 -0.4 4,651,185 + Pf1N1B4_4199 0.62 -0.2 4,651,503 + Pf1N1B4_4199 0.87 -0.4 4,651,504 - Pf1N1B4_4199 0.87 -1.4 4,651,569 + -0.2 4,651,783 + +0.2 4,651,784 - +0.7 4,651,912 - -0.5 4,652,215 + Pf1N1B4_4200 0.34 +2.6 4,652,215 + Pf1N1B4_4200 0.34 -0.4 4,652,216 - -2.0 4,652,298 + Pf1N1B4_4200 0.41 -0.8 4,652,484 + Pf1N1B4_4200 0.56 +0.3 4,652,485 - Pf1N1B4_4200 0.56 +0.0 4,652,485 - Pf1N1B4_4200 0.56 +0.3 4,652,636 + Pf1N1B4_4200 0.68 -0.2 4,652,643 + +2.4
Or see this region's nucleotide sequence