Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_203 and Pf1N1B4_204 are separated by 204 nucleotides Pf1N1B4_204 and Pf1N1B4_205 are separated by 81 nucleotides
Pf1N1B4_203 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 249,917 to 250,888
_203
Pf1N1B4_204 - FIG006220: Hypothetical MbtH-like protein, at 251,093 to 251,320
_204
Pf1N1B4_205 - Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76), at 251,402 to 252,814
_205
Position (kb) 251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.104 kb on - strand, within Pf1N1B4_203 at 250.194 kb on - strand, within Pf1N1B4_203 at 250.226 kb on - strand, within Pf1N1B4_203 at 250.313 kb on - strand, within Pf1N1B4_203 at 250.500 kb on + strand, within Pf1N1B4_203 at 250.501 kb on - strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.738 kb on - strand, within Pf1N1B4_203 at 250.956 kb on + strand at 250.956 kb on + strand at 251.173 kb on - strand, within Pf1N1B4_204 at 251.238 kb on + strand, within Pf1N1B4_204 at 251.239 kb on - strand at 251.239 kb on - strand, within Pf1N1B4_204 at 251.310 kb on - strand at 251.339 kb on + strand at 251.339 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.863 kb on - strand, within Pf1N1B4_205 at 252.002 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.151 kb on - strand, within Pf1N1B4_205 at 252.211 kb on - strand, within Pf1N1B4_205
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 250,103 + Pf1N1B4_203 0.19 -1.1 250,103 + Pf1N1B4_203 0.19 -2.6 250,104 - Pf1N1B4_203 0.19 +0.2 250,194 - Pf1N1B4_203 0.28 +0.8 250,226 - Pf1N1B4_203 0.32 -0.8 250,313 - Pf1N1B4_203 0.41 -1.2 250,500 + Pf1N1B4_203 0.60 -0.2 250,501 - Pf1N1B4_203 0.60 +1.0 250,737 + Pf1N1B4_203 0.84 +0.3 250,737 + Pf1N1B4_203 0.84 -0.2 250,737 + Pf1N1B4_203 0.84 +0.8 250,738 - Pf1N1B4_203 0.84 +0.8 250,956 + -0.8 250,956 + -0.2 251,173 - Pf1N1B4_204 0.35 +0.4 251,238 + Pf1N1B4_204 0.64 -1.0 251,239 - +1.1 251,239 - Pf1N1B4_204 0.64 -0.2 251,310 - -0.5 251,339 + -0.2 251,339 + -1.2 251,373 + +1.3 251,373 + +0.5 251,373 + +0.3 251,373 + +0.8 251,373 + -0.8 251,374 - -0.1 251,374 - -1.5 251,374 - -1.2 251,374 - +0.8 251,374 - +1.1 251,374 - +1.1 251,374 - +1.3 251,374 - +0.1 251,863 - Pf1N1B4_205 0.33 -0.9 252,002 + Pf1N1B4_205 0.42 +0.2 252,150 + Pf1N1B4_205 0.53 +0.8 252,150 + Pf1N1B4_205 0.53 +0.3 252,150 + Pf1N1B4_205 0.53 +1.3 252,151 - Pf1N1B4_205 0.53 +0.6 252,211 - Pf1N1B4_205 0.57 +2.1
Or see this region's nucleotide sequence