Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06456

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06454 and H281DRAFT_06455 are separated by 159 nucleotidesH281DRAFT_06455 and H281DRAFT_06456 overlap by 102 nucleotidesH281DRAFT_06456 and H281DRAFT_06457 are separated by 587 nucleotides H281DRAFT_06454: H281DRAFT_06454 - NAD(P)H-nitrite reductase, at 63,281 to 64,810 _06454 H281DRAFT_06455: H281DRAFT_06455 - transcriptional regulator, TraR/DksA family, at 64,970 to 65,350 _06455 H281DRAFT_06456: H281DRAFT_06456 - hypothetical protein, at 65,249 to 65,656 _06456 H281DRAFT_06457: H281DRAFT_06457 - hypothetical protein, at 66,244 to 66,456 _06457 Position (kb) 65 66Strain fitness (log2 ratio) -1 0 1 2at 64.381 kb on - strand, within H281DRAFT_06454at 64.417 kb on - strand, within H281DRAFT_06454at 64.493 kb on - strand, within H281DRAFT_06454at 64.502 kb on + strand, within H281DRAFT_06454at 64.620 kb on - strand, within H281DRAFT_06454at 64.620 kb on - strand, within H281DRAFT_06454at 64.622 kb on - strand, within H281DRAFT_06454at 64.638 kb on - strand, within H281DRAFT_06454at 64.932 kb on - strandat 64.976 kb on - strandat 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.153 kb on + strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.154 kb on - strand, within H281DRAFT_06455at 65.240 kb on + strand, within H281DRAFT_06455at 65.241 kb on - strand, within H281DRAFT_06455at 65.241 kb on - strand, within H281DRAFT_06455at 65.258 kb on - strandat 65.258 kb on - strandat 65.490 kb on + strand, within H281DRAFT_06456at 65.491 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.500 kb on + strand, within H281DRAFT_06456at 65.587 kb on - strand, within H281DRAFT_06456at 65.688 kb on + strandat 65.734 kb on + strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.928 kb on - strandat 65.953 kb on + strandat 66.154 kb on - strandat 66.212 kb on + strandat 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.372 kb on - strand, within H281DRAFT_06457at 66.372 kb on - strand, within H281DRAFT_06457at 66.404 kb on + strand, within H281DRAFT_06457at 66.441 kb on + strandat 66.442 kb on - strandat 66.484 kb on + strandat 66.485 kb on - strandat 66.485 kb on - strandat 66.622 kb on + strandat 66.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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64,381 - H281DRAFT_06454 0.72 +0.2
64,417 - H281DRAFT_06454 0.74 +0.2
64,493 - H281DRAFT_06454 0.79 -0.3
64,502 + H281DRAFT_06454 0.80 -0.8
64,620 - H281DRAFT_06454 0.88 -0.1
64,620 - H281DRAFT_06454 0.88 +0.8
64,622 - H281DRAFT_06454 0.88 +1.3
64,638 - H281DRAFT_06454 0.89 -0.5
64,932 - -0.5
64,976 - -0.7
65,153 + H281DRAFT_06455 0.48 +1.1
65,153 + H281DRAFT_06455 0.48 +0.6
65,153 + H281DRAFT_06455 0.48 -1.4
65,153 + H281DRAFT_06455 0.48 +0.1
65,154 - H281DRAFT_06455 0.48 +0.1
65,154 - H281DRAFT_06455 0.48 +0.1
65,154 - H281DRAFT_06455 0.48 +0.9
65,154 - H281DRAFT_06455 0.48 +0.6
65,154 - H281DRAFT_06455 0.48 -0.4
65,154 - H281DRAFT_06455 0.48 +0.0
65,240 + H281DRAFT_06455 0.71 +0.0
65,241 - H281DRAFT_06455 0.71 +1.0
65,241 - H281DRAFT_06455 0.71 -0.3
65,258 - -0.1
65,258 - +0.2
65,490 + H281DRAFT_06456 0.59 +1.1
65,491 - H281DRAFT_06456 0.59 -0.2
65,498 - H281DRAFT_06456 0.61 -0.3
65,498 - H281DRAFT_06456 0.61 +0.1
65,500 + H281DRAFT_06456 0.62 -0.3
65,587 - H281DRAFT_06456 0.83 -0.7
65,688 + -0.5
65,734 + +0.4
65,806 - -0.2
65,806 - -1.1
65,806 - +0.3
65,928 - +0.2
65,953 + -0.5
66,154 - -0.3
66,212 + +0.3
66,371 + H281DRAFT_06457 0.60 +0.7
66,371 + H281DRAFT_06457 0.60 +2.5
66,371 + H281DRAFT_06457 0.60 -0.3
66,371 + H281DRAFT_06457 0.60 -0.0
66,371 + H281DRAFT_06457 0.60 -0.3
66,371 + H281DRAFT_06457 0.60 +1.5
66,372 - H281DRAFT_06457 0.60 +1.4
66,372 - H281DRAFT_06457 0.60 -0.3
66,404 + H281DRAFT_06457 0.75 +0.1
66,441 + +0.2
66,442 - +0.1
66,484 + +1.0
66,485 - +0.3
66,485 - +0.9
66,622 + -0.1
66,623 - +0.2

Or see this region's nucleotide sequence