Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05152

Experiment: D-Glucose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05150 and H281DRAFT_05151 are separated by 352 nucleotidesH281DRAFT_05151 and H281DRAFT_05152 are separated by 117 nucleotidesH281DRAFT_05152 and H281DRAFT_05153 are separated by 83 nucleotidesH281DRAFT_05153 and H281DRAFT_05154 are separated by 49 nucleotides H281DRAFT_05150: H281DRAFT_05150 - 2'-5' RNA ligase, at 104,549 to 105,154 _05150 H281DRAFT_05151: H281DRAFT_05151 - hypothetical protein, at 105,507 to 105,671 _05151 H281DRAFT_05152: H281DRAFT_05152 - protein of unknown function (DUF1992), at 105,789 to 106,220 _05152 H281DRAFT_05153: H281DRAFT_05153 - tRNA(adenine34) deaminase, at 106,304 to 106,987 _05153 H281DRAFT_05154: H281DRAFT_05154 - murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66, at 107,037 to 107,963 _05154 Position (kb) 105 106 107Strain fitness (log2 ratio) -1 0 1 2at 104.990 kb on + strand, within H281DRAFT_05150at 104.992 kb on + strand, within H281DRAFT_05150at 104.992 kb on + strand, within H281DRAFT_05150at 105.085 kb on - strand, within H281DRAFT_05150at 105.093 kb on + strand, within H281DRAFT_05150at 105.112 kb on + strandat 105.113 kb on - strandat 105.113 kb on - strandat 105.173 kb on + strandat 105.262 kb on - strandat 105.271 kb on + strandat 105.330 kb on - strandat 105.374 kb on + strandat 105.375 kb on - strandat 105.391 kb on + strandat 105.392 kb on - strandat 105.484 kb on + strandat 105.485 kb on - strandat 105.485 kb on - strandat 105.577 kb on + strand, within H281DRAFT_05151at 105.590 kb on + strand, within H281DRAFT_05151at 105.755 kb on + strandat 105.756 kb on - strandat 105.776 kb on + strandat 105.821 kb on + strandat 106.315 kb on + strandat 107.032 kb on + strandat 107.152 kb on + strand, within H281DRAFT_05154at 107.153 kb on - strand, within H281DRAFT_05154at 107.153 kb on - strand, within H281DRAFT_05154

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
remove
104,990 + H281DRAFT_05150 0.73 +0.7
104,992 + H281DRAFT_05150 0.73 +0.3
104,992 + H281DRAFT_05150 0.73 -0.1
105,085 - H281DRAFT_05150 0.88 +0.1
105,093 + H281DRAFT_05150 0.90 -0.1
105,112 + +2.4
105,113 - -0.2
105,113 - +0.2
105,173 + +0.1
105,262 - +1.4
105,271 + -0.4
105,330 - +0.1
105,374 + -0.4
105,375 - -0.5
105,391 + -0.4
105,392 - -0.1
105,484 + +0.3
105,485 - +0.2
105,485 - +0.6
105,577 + H281DRAFT_05151 0.42 -0.3
105,590 + H281DRAFT_05151 0.50 +1.1
105,755 + +0.1
105,756 - +0.3
105,776 + +0.2
105,821 + +0.1
106,315 + +0.1
107,032 + +0.1
107,152 + H281DRAFT_05154 0.12 +2.7
107,153 - H281DRAFT_05154 0.13 +0.2
107,153 - H281DRAFT_05154 0.13 +0.1

Or see this region's nucleotide sequence