Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03192

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03191 and H281DRAFT_03192 are separated by 223 nucleotidesH281DRAFT_03192 and H281DRAFT_03193 are separated by 42 nucleotides H281DRAFT_03191: H281DRAFT_03191 - outer membrane protein, multidrug efflux system, at 238,776 to 240,371 _03191 H281DRAFT_03192: H281DRAFT_03192 - D-methionine transport system substrate-binding protein, at 240,595 to 241,434 _03192 H281DRAFT_03193: H281DRAFT_03193 - FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family, at 241,477 to 242,883 _03193 Position (kb) 240 241 242Strain fitness (log2 ratio) -1 0 1 2at 239.610 kb on - strand, within H281DRAFT_03191at 239.833 kb on - strand, within H281DRAFT_03191at 240.132 kb on + strand, within H281DRAFT_03191at 240.192 kb on - strand, within H281DRAFT_03191at 240.491 kb on + strandat 240.515 kb on + strandat 240.516 kb on - strandat 240.575 kb on - strandat 240.872 kb on - strand, within H281DRAFT_03192at 241.129 kb on - strand, within H281DRAFT_03192at 241.654 kb on - strand, within H281DRAFT_03193at 241.805 kb on - strand, within H281DRAFT_03193at 241.972 kb on - strand, within H281DRAFT_03193

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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239,610 - H281DRAFT_03191 0.52 +0.8
239,833 - H281DRAFT_03191 0.66 -0.4
240,132 + H281DRAFT_03191 0.85 +0.2
240,192 - H281DRAFT_03191 0.89 -0.2
240,491 + +1.8
240,515 + +0.1
240,516 - -0.4
240,575 - +0.4
240,872 - H281DRAFT_03192 0.33 +0.5
241,129 - H281DRAFT_03192 0.64 +1.1
241,654 - H281DRAFT_03193 0.13 -0.4
241,805 - H281DRAFT_03193 0.23 +0.2
241,972 - H281DRAFT_03193 0.35 -0.3

Or see this region's nucleotide sequence