Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02003

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02000 and H281DRAFT_02001 are separated by 21 nucleotidesH281DRAFT_02001 and H281DRAFT_02002 are separated by 150 nucleotidesH281DRAFT_02002 and H281DRAFT_02003 overlap by 4 nucleotidesH281DRAFT_02003 and H281DRAFT_02004 are separated by 22 nucleotides H281DRAFT_02000: H281DRAFT_02000 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 117,851 to 118,849 _02000 H281DRAFT_02001: H281DRAFT_02001 - protein translocase subunit secB, at 118,871 to 119,341 _02001 H281DRAFT_02002: H281DRAFT_02002 - glutaredoxin 3, at 119,492 to 119,752 _02002 H281DRAFT_02003: H281DRAFT_02003 - Rhodanese-related sulfurtransferase, at 119,749 to 120,222 _02003 H281DRAFT_02004: H281DRAFT_02004 - phosphoglycerate mutase, at 120,245 to 121,057 _02004 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1at 118.849 kb on + strandat 118.872 kb on + strandat 118.872 kb on + strandat 118.872 kb on + strandat 118.873 kb on - strandat 118.873 kb on - strandat 118.873 kb on - strandat 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 118.936 kb on - strand, within H281DRAFT_02001at 119.360 kb on + strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.361 kb on - strandat 119.364 kb on + strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.365 kb on - strandat 119.370 kb on + strandat 119.403 kb on + strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.404 kb on - strandat 119.453 kb on - strandat 119.453 kb on - strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.733 kb on + strandat 119.734 kb on - strandat 119.759 kb on - strandat 119.853 kb on + strand, within H281DRAFT_02003at 119.913 kb on + strand, within H281DRAFT_02003at 119.913 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.155 kb on + strand, within H281DRAFT_02003at 120.156 kb on - strand, within H281DRAFT_02003at 120.223 kb on + strandat 120.224 kb on - strandat 120.225 kb on + strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.226 kb on - strandat 120.230 kb on + strandat 120.231 kb on - strandat 120.231 kb on - strandat 120.260 kb on + strandat 120.260 kb on + strandat 120.260 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.310 kb on + strandat 120.311 kb on - strandat 120.314 kb on + strandat 120.315 kb on - strandat 120.453 kb on - strand, within H281DRAFT_02004at 120.470 kb on + strand, within H281DRAFT_02004at 120.472 kb on + strand, within H281DRAFT_02004at 120.473 kb on - strand, within H281DRAFT_02004at 120.473 kb on - strand, within H281DRAFT_02004at 120.536 kb on + strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.537 kb on - strand, within H281DRAFT_02004at 120.884 kb on + strand, within H281DRAFT_02004at 120.951 kb on - strand, within H281DRAFT_02004at 120.951 kb on - strand, within H281DRAFT_02004at 120.987 kb on - strandat 120.989 kb on + strandat 120.990 kb on - strandat 121.083 kb on + strandat 121.083 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.094 kb on + strandat 121.095 kb on - strandat 121.095 kb on - strandat 121.095 kb on - strandat 121.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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118,849 + -2.8
118,872 + -3.7
118,872 + -1.6
118,872 + -3.5
118,873 - -3.1
118,873 - -0.4
118,873 - -2.3
118,936 - H281DRAFT_02001 0.14 +0.4
118,936 - H281DRAFT_02001 0.14 -0.4
118,936 - H281DRAFT_02001 0.14 -0.2
118,936 - H281DRAFT_02001 0.14 -0.4
118,936 - H281DRAFT_02001 0.14 -0.2
118,936 - H281DRAFT_02001 0.14 -0.4
118,936 - H281DRAFT_02001 0.14 -1.0
118,936 - H281DRAFT_02001 0.14 -0.2
119,360 + -2.4
119,361 - +0.2
119,361 - -2.2
119,361 - +0.3
119,361 - -0.3
119,361 - +0.6
119,364 + -2.3
119,365 - +0.5
119,365 - -0.5
119,365 - +0.4
119,365 - -0.1
119,365 - +0.8
119,365 - -0.1
119,365 - -0.4
119,365 - -0.9
119,370 + +0.1
119,403 + -0.5
119,404 - -0.0
119,404 - +0.4
119,404 - -0.7
119,404 - -0.5
119,404 - +0.0
119,453 - +0.2
119,453 - -0.8
119,733 + -1.1
119,733 + -0.9
119,733 + -1.0
119,733 + +0.3
119,734 - +0.1
119,759 - -0.3
119,853 + H281DRAFT_02003 0.22 +0.7
119,913 + H281DRAFT_02003 0.35 +1.5
119,913 + H281DRAFT_02003 0.35 +0.0
120,155 + H281DRAFT_02003 0.86 +0.7
120,155 + H281DRAFT_02003 0.86 +1.1
120,155 + H281DRAFT_02003 0.86 -0.5
120,156 - H281DRAFT_02003 0.86 +0.7
120,223 + -0.6
120,224 - +0.2
120,225 + -0.7
120,226 - +0.7
120,226 - -0.1
120,226 - +0.6
120,226 - -1.1
120,230 + +0.0
120,231 - +0.1
120,231 - -3.1
120,260 + -0.2
120,260 + +0.6
120,260 + +0.1
120,310 + -0.9
120,310 + -2.5
120,310 + -0.4
120,310 + -0.6
120,310 + -0.1
120,310 + -0.4
120,311 - -2.6
120,314 + -3.3
120,315 - -0.9
120,453 - H281DRAFT_02004 0.26 -2.7
120,470 + H281DRAFT_02004 0.28 +0.7
120,472 + H281DRAFT_02004 0.28 -1.3
120,473 - H281DRAFT_02004 0.28 -2.9
120,473 - H281DRAFT_02004 0.28 -0.9
120,536 + H281DRAFT_02004 0.36 -1.6
120,537 - H281DRAFT_02004 0.36 -1.6
120,537 - H281DRAFT_02004 0.36 -3.5
120,537 - H281DRAFT_02004 0.36 -3.3
120,884 + H281DRAFT_02004 0.79 -0.9
120,951 - H281DRAFT_02004 0.87 -2.2
120,951 - H281DRAFT_02004 0.87 -2.1
120,987 - -1.0
120,989 + -1.7
120,990 - -0.3
121,083 + -1.5
121,083 + +0.5
121,094 + +0.1
121,094 + -0.4
121,094 + -0.1
121,094 + -0.5
121,094 + +0.9
121,094 + -0.3
121,094 + +0.2
121,095 - -0.3
121,095 - +0.1
121,095 - +0.1
121,095 - +0.1

Or see this region's nucleotide sequence