Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01701

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01700 and H281DRAFT_01701 are separated by 199 nucleotidesH281DRAFT_01701 and H281DRAFT_01702 are separated by 361 nucleotidesH281DRAFT_01702 and H281DRAFT_01703 are separated by 14 nucleotides H281DRAFT_01700: H281DRAFT_01700 - filamentous hemagglutinin family N-terminal domain-containing protein, at 585,502 to 587,886 _01700 H281DRAFT_01701: H281DRAFT_01701 - hypothetical protein, at 588,086 to 588,193 _01701 H281DRAFT_01702: H281DRAFT_01702 - hypothetical protein, at 588,555 to 588,791 _01702 H281DRAFT_01703: H281DRAFT_01703 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 588,806 to 590,158 _01703 Position (kb) 588 589Strain fitness (log2 ratio) -1 0 1at 587.220 kb on - strand, within H281DRAFT_01700at 587.231 kb on + strand, within H281DRAFT_01700at 587.232 kb on - strand, within H281DRAFT_01700at 587.232 kb on - strand, within H281DRAFT_01700at 587.232 kb on - strand, within H281DRAFT_01700at 587.285 kb on - strand, within H281DRAFT_01700at 587.285 kb on - strand, within H281DRAFT_01700at 587.317 kb on + strand, within H281DRAFT_01700at 587.319 kb on + strand, within H281DRAFT_01700at 587.320 kb on - strand, within H281DRAFT_01700at 587.320 kb on - strand, within H281DRAFT_01700at 587.508 kb on + strand, within H281DRAFT_01700at 587.522 kb on + strand, within H281DRAFT_01700at 587.523 kb on - strand, within H281DRAFT_01700at 587.552 kb on + strand, within H281DRAFT_01700at 587.552 kb on + strand, within H281DRAFT_01700at 587.781 kb on - strandat 588.011 kb on + strandat 588.015 kb on - strandat 588.015 kb on - strandat 588.087 kb on + strandat 588.118 kb on - strand, within H281DRAFT_01701at 588.158 kb on - strand, within H281DRAFT_01701at 588.223 kb on + strandat 588.286 kb on + strandat 588.400 kb on - strandat 588.907 kb on - strandat 589.035 kb on + strand, within H281DRAFT_01703at 589.060 kb on + strand, within H281DRAFT_01703

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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587,220 - H281DRAFT_01700 0.72 +0.3
587,231 + H281DRAFT_01700 0.72 +0.3
587,232 - H281DRAFT_01700 0.73 +0.2
587,232 - H281DRAFT_01700 0.73 +0.0
587,232 - H281DRAFT_01700 0.73 -0.3
587,285 - H281DRAFT_01700 0.75 -1.1
587,285 - H281DRAFT_01700 0.75 -0.3
587,317 + H281DRAFT_01700 0.76 +0.7
587,319 + H281DRAFT_01700 0.76 -0.1
587,320 - H281DRAFT_01700 0.76 +0.4
587,320 - H281DRAFT_01700 0.76 -0.0
587,508 + H281DRAFT_01700 0.84 -0.3
587,522 + H281DRAFT_01700 0.85 +0.7
587,523 - H281DRAFT_01700 0.85 -0.8
587,552 + H281DRAFT_01700 0.86 +0.6
587,552 + H281DRAFT_01700 0.86 -0.3
587,781 - -1.1
588,011 + -0.5
588,015 - +0.5
588,015 - +0.8
588,087 + +0.3
588,118 - H281DRAFT_01701 0.30 +0.8
588,158 - H281DRAFT_01701 0.67 +1.0
588,223 + -0.5
588,286 + -0.4
588,400 - -0.0
588,907 - -0.2
589,035 + H281DRAFT_01703 0.17 +0.2
589,060 + H281DRAFT_01703 0.19 -0.6

Or see this region's nucleotide sequence