Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01105

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01104 and H281DRAFT_01105 are separated by 441 nucleotidesH281DRAFT_01105 and H281DRAFT_01106 are separated by 176 nucleotides H281DRAFT_01104: H281DRAFT_01104 - non-heme chloroperoxidase, at 1,241,135 to 1,241,956 _01104 H281DRAFT_01105: H281DRAFT_01105 - transcriptional regulator, AraC family, at 1,242,398 to 1,243,312 _01105 H281DRAFT_01106: H281DRAFT_01106 - Predicted ATPase, at 1,243,489 to 1,246,410 _01106 Position (kb) 1242 1243 1244Strain fitness (log2 ratio) -1 0 1at 1241.444 kb on + strand, within H281DRAFT_01104at 1241.445 kb on - strand, within H281DRAFT_01104at 1241.601 kb on - strand, within H281DRAFT_01104at 1241.624 kb on + strand, within H281DRAFT_01104at 1241.747 kb on + strand, within H281DRAFT_01104at 1241.876 kb on + strandat 1242.099 kb on + strandat 1242.150 kb on - strandat 1242.150 kb on - strandat 1242.203 kb on - strandat 1242.409 kb on + strandat 1242.410 kb on - strandat 1242.623 kb on + strand, within H281DRAFT_01105at 1242.624 kb on - strandat 1243.091 kb on + strand, within H281DRAFT_01105at 1243.156 kb on + strand, within H281DRAFT_01105at 1243.417 kb on + strandat 1243.423 kb on - strandat 1243.440 kb on - strandat 1243.440 kb on - strandat 1243.675 kb on - strandat 1243.677 kb on + strandat 1243.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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1,241,444 + H281DRAFT_01104 0.38 -0.4
1,241,445 - H281DRAFT_01104 0.38 +0.2
1,241,601 - H281DRAFT_01104 0.57 -0.1
1,241,624 + H281DRAFT_01104 0.59 +0.6
1,241,747 + H281DRAFT_01104 0.74 +0.2
1,241,876 + +0.1
1,242,099 + -1.1
1,242,150 - +0.6
1,242,150 - +0.0
1,242,203 - -0.4
1,242,409 + -0.4
1,242,410 - -0.7
1,242,623 + H281DRAFT_01105 0.25 +0.7
1,242,624 - +1.6
1,243,091 + H281DRAFT_01105 0.76 +1.0
1,243,156 + H281DRAFT_01105 0.83 +0.2
1,243,417 + -1.7
1,243,423 - -0.8
1,243,440 - +0.3
1,243,440 - -0.5
1,243,675 - -0.5
1,243,677 + +0.9
1,243,678 - -1.0

Or see this region's nucleotide sequence