Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01093

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01092 and H281DRAFT_01093 are separated by 47 nucleotidesH281DRAFT_01093 and H281DRAFT_01094 are separated by 113 nucleotidesH281DRAFT_01094 and H281DRAFT_01095 are separated by 72 nucleotides H281DRAFT_01092: H281DRAFT_01092 - transcriptional regulator, LysR family, at 1,225,149 to 1,226,090 _01092 H281DRAFT_01093: H281DRAFT_01093 - transcriptional regulator, winged helix family, at 1,226,138 to 1,229,152 _01093 H281DRAFT_01094: H281DRAFT_01094 - protein of unknown function (DUF3331), at 1,229,266 to 1,229,781 _01094 H281DRAFT_01095: H281DRAFT_01095 - Glyoxylase, beta-lactamase superfamily II, at 1,229,854 to 1,230,843 _01095 Position (kb) 1226 1227 1228 1229 1230Strain fitness (log2 ratio) -1 0 1 2at 1225.232 kb on + strandat 1225.255 kb on - strand, within H281DRAFT_01092at 1225.538 kb on - strand, within H281DRAFT_01092at 1225.956 kb on + strand, within H281DRAFT_01092at 1226.805 kb on - strand, within H281DRAFT_01093at 1227.144 kb on + strand, within H281DRAFT_01093at 1227.697 kb on - strand, within H281DRAFT_01093at 1227.783 kb on + strand, within H281DRAFT_01093at 1228.330 kb on - strand, within H281DRAFT_01093at 1228.559 kb on + strand, within H281DRAFT_01093at 1228.560 kb on - strand, within H281DRAFT_01093at 1228.600 kb on - strand, within H281DRAFT_01093at 1228.884 kb on + strandat 1228.952 kb on - strandat 1228.952 kb on - strandat 1228.952 kb on - strandat 1228.952 kb on - strandat 1229.268 kb on - strandat 1229.268 kb on - strandat 1229.473 kb on + strand, within H281DRAFT_01094at 1229.591 kb on + strand, within H281DRAFT_01094at 1229.592 kb on - strand, within H281DRAFT_01094at 1229.963 kb on + strand, within H281DRAFT_01095

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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1,225,232 + +0.6
1,225,255 - H281DRAFT_01092 0.11 +0.7
1,225,538 - H281DRAFT_01092 0.41 +0.6
1,225,956 + H281DRAFT_01092 0.86 -0.9
1,226,805 - H281DRAFT_01093 0.22 +0.2
1,227,144 + H281DRAFT_01093 0.33 +0.4
1,227,697 - H281DRAFT_01093 0.52 +0.6
1,227,783 + H281DRAFT_01093 0.55 +0.6
1,228,330 - H281DRAFT_01093 0.73 -0.4
1,228,559 + H281DRAFT_01093 0.80 +1.0
1,228,560 - H281DRAFT_01093 0.80 -0.2
1,228,600 - H281DRAFT_01093 0.82 -1.4
1,228,884 + +0.0
1,228,952 - -0.2
1,228,952 - +0.0
1,228,952 - -0.0
1,228,952 - -0.6
1,229,268 - +1.6
1,229,268 - -0.3
1,229,473 + H281DRAFT_01094 0.40 +2.3
1,229,591 + H281DRAFT_01094 0.63 -0.5
1,229,592 - H281DRAFT_01094 0.63 -0.2
1,229,963 + H281DRAFT_01095 0.11 +0.4

Or see this region's nucleotide sequence