Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2828 and Dsui_2829 are separated by 162 nucleotides Dsui_2829 and Dsui_2830 overlap by 4 nucleotides
Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079
_2828
Dsui_2829: Dsui_2829 - hypothetical protein, at 3,006,242 to 3,006,568
_2829
Dsui_2830: Dsui_2830 - adenine specific DNA methylase Mod, at 3,006,565 to 3,007,731
_2830
Position (kb)
3006
3007 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3005.248 kb on - strand, within Dsui_2828 at 3005.280 kb on + strand, within Dsui_2828 at 3005.297 kb on + strand at 3005.472 kb on + strand, within Dsui_2828 at 3005.572 kb on + strand, within Dsui_2828 at 3005.636 kb on + strand, within Dsui_2828 at 3005.644 kb on - strand at 3005.644 kb on - strand, within Dsui_2828 at 3005.665 kb on + strand, within Dsui_2828 at 3005.724 kb on - strand at 3005.764 kb on + strand, within Dsui_2828 at 3005.825 kb on - strand, within Dsui_2828 at 3005.851 kb on + strand, within Dsui_2828 at 3005.862 kb on + strand, within Dsui_2828 at 3005.971 kb on - strand, within Dsui_2828 at 3005.978 kb on - strand at 3005.978 kb on - strand at 3005.982 kb on + strand at 3005.990 kb on - strand at 3005.990 kb on - strand at 3005.992 kb on + strand at 3005.992 kb on + strand at 3005.992 kb on + strand at 3006.212 kb on + strand at 3006.305 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.310 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.322 kb on + strand, within Dsui_2829 at 3006.328 kb on + strand, within Dsui_2829 at 3006.436 kb on + strand, within Dsui_2829 at 3006.479 kb on + strand, within Dsui_2829 at 3006.498 kb on + strand, within Dsui_2829 at 3006.547 kb on + strand at 3006.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 3,005,248 - Dsui_2828 0.18 +0.2 3,005,280 + Dsui_2828 0.22 -2.8 3,005,297 + -3.5 3,005,472 + Dsui_2828 0.40 -0.6 3,005,572 + Dsui_2828 0.50 -4.9 3,005,636 + Dsui_2828 0.56 +0.3 3,005,644 - -0.9 3,005,644 - Dsui_2828 0.57 -2.0 3,005,665 + Dsui_2828 0.59 -0.7 3,005,724 - -2.1 3,005,764 + Dsui_2828 0.69 -1.6 3,005,825 - Dsui_2828 0.75 -1.4 3,005,851 + Dsui_2828 0.78 -3.5 3,005,862 + Dsui_2828 0.79 -2.8 3,005,971 - Dsui_2828 0.89 -0.9 3,005,978 - -2.9 3,005,978 - -0.9 3,005,982 + -4.4 3,005,990 - -0.4 3,005,990 - -0.4 3,005,992 + -1.4 3,005,992 + -1.8 3,005,992 + -2.5 3,006,212 + +0.5 3,006,305 + Dsui_2829 0.19 +1.0 3,006,310 + Dsui_2829 0.21 -0.8 3,006,310 + Dsui_2829 0.21 -0.4 3,006,310 + Dsui_2829 0.21 +0.3 3,006,322 + Dsui_2829 0.24 +0.4 3,006,322 + Dsui_2829 0.24 -0.2 3,006,322 + Dsui_2829 0.24 -0.4 3,006,328 + Dsui_2829 0.26 -0.1 3,006,436 + Dsui_2829 0.59 +0.2 3,006,479 + Dsui_2829 0.72 +0.3 3,006,498 + Dsui_2829 0.78 -0.1 3,006,547 + +0.4 3,006,548 + +0.7
Or see this region's nucleotide sequence