Strain Fitness in Dechlorosoma suillum PS around Dsui_2397

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2395 and Dsui_2396 overlap by 4 nucleotidesDsui_2396 and Dsui_2397 are separated by 112 nucleotidesDsui_2397 and Dsui_2398 are separated by 25 nucleotides Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112 _2395 Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951 _2396 Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780 _2397 Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801 _2398 Position (kb) 2550 2551Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2549.068 kb on - strandat 2549.068 kb on - strand, within Dsui_2395at 2549.068 kb on - strandat 2549.143 kb on - strandat 2549.159 kb on - strandat 2549.210 kb on + strand, within Dsui_2396at 2549.250 kb on - strandat 2549.276 kb on - strandat 2549.335 kb on + strand, within Dsui_2396at 2549.339 kb on + strand, within Dsui_2396at 2549.347 kb on - strandat 2549.395 kb on + strand, within Dsui_2396at 2549.545 kb on + strand, within Dsui_2396at 2549.586 kb on + strand, within Dsui_2396at 2549.629 kb on - strandat 2549.646 kb on + strand, within Dsui_2396at 2549.654 kb on - strand, within Dsui_2396at 2549.669 kb on - strand, within Dsui_2396at 2549.794 kb on + strand, within Dsui_2396at 2549.800 kb on + strand, within Dsui_2396at 2549.853 kb on + strand, within Dsui_2396at 2549.915 kb on - strandat 2549.938 kb on + strandat 2550.036 kb on + strandat 2550.044 kb on + strandat 2550.049 kb on + strandat 2550.049 kb on + strandat 2550.059 kb on + strandat 2550.066 kb on + strandat 2550.093 kb on + strandat 2550.148 kb on + strand, within Dsui_2397at 2550.206 kb on + strand, within Dsui_2397at 2550.230 kb on + strand, within Dsui_2397at 2550.357 kb on + strand, within Dsui_2397at 2550.377 kb on + strand, within Dsui_2397at 2550.379 kb on - strandat 2550.420 kb on - strandat 2550.460 kb on - strand, within Dsui_2397at 2550.566 kb on + strand, within Dsui_2397at 2550.566 kb on + strand, within Dsui_2397at 2550.590 kb on + strandat 2550.603 kb on - strand, within Dsui_2397at 2550.654 kb on - strand, within Dsui_2397at 2550.723 kb on + strandat 2550.978 kb on + strandat 2550.986 kb on - strand, within Dsui_2398at 2551.000 kb on - strand, within Dsui_2398at 2551.000 kb on - strandat 2551.104 kb on - strand, within Dsui_2398at 2551.114 kb on - strand, within Dsui_2398at 2551.136 kb on - strand, within Dsui_2398at 2551.225 kb on - strand, within Dsui_2398at 2551.226 kb on - strandat 2551.285 kb on + strandat 2551.510 kb on - strandat 2551.544 kb on + strandat 2551.634 kb on + strand, within Dsui_2398at 2551.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,549,068 - -0.5
2,549,068 - Dsui_2395 0.86 -2.3
2,549,068 - +0.0
2,549,143 - -0.2
2,549,159 - +1.8
2,549,210 + Dsui_2396 0.12 +0.5
2,549,250 - -1.6
2,549,276 - +0.9
2,549,335 + Dsui_2396 0.27 +1.6
2,549,339 + Dsui_2396 0.27 +1.0
2,549,347 - -1.7
2,549,395 + Dsui_2396 0.34 +0.3
2,549,545 + Dsui_2396 0.52 +1.6
2,549,586 + Dsui_2396 0.57 +1.6
2,549,629 - +1.5
2,549,646 + Dsui_2396 0.64 +1.4
2,549,654 - Dsui_2396 0.65 -1.3
2,549,669 - Dsui_2396 0.66 -1.1
2,549,794 + Dsui_2396 0.81 +1.1
2,549,800 + Dsui_2396 0.82 +0.4
2,549,853 + Dsui_2396 0.88 +1.6
2,549,915 - +2.1
2,549,938 + +1.3
2,550,036 + +1.5
2,550,044 + +0.4
2,550,049 + +1.6
2,550,049 + +0.9
2,550,059 + +0.8
2,550,066 + +1.2
2,550,093 + +1.5
2,550,148 + Dsui_2397 0.12 +1.7
2,550,206 + Dsui_2397 0.20 +1.0
2,550,230 + Dsui_2397 0.23 +1.5
2,550,357 + Dsui_2397 0.41 +1.2
2,550,377 + Dsui_2397 0.44 +1.2
2,550,379 - +0.8
2,550,420 - -2.4
2,550,460 - Dsui_2397 0.55 +0.4
2,550,566 + Dsui_2397 0.70 -0.4
2,550,566 + Dsui_2397 0.70 +0.4
2,550,590 + +0.9
2,550,603 - Dsui_2397 0.75 -0.5
2,550,654 - Dsui_2397 0.82 +1.0
2,550,723 + -2.0
2,550,978 + -2.0
2,550,986 - Dsui_2398 0.18 -0.0
2,551,000 - Dsui_2398 0.19 -1.0
2,551,000 - -3.1
2,551,104 - Dsui_2398 0.30 -0.5
2,551,114 - Dsui_2398 0.31 +0.5
2,551,136 - Dsui_2398 0.33 +0.4
2,551,225 - Dsui_2398 0.42 -4.1
2,551,226 - -2.7
2,551,285 + -0.8
2,551,510 - +0.8
2,551,544 + -0.6
2,551,634 + Dsui_2398 0.83 -2.4
2,551,704 + -1.1

Or see this region's nucleotide sequence