Strain Fitness in Dechlorosoma suillum PS around Dsui_2111

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2110 and Dsui_2111 are separated by 113 nucleotidesDsui_2111 and Dsui_2112 overlap by 26 nucleotidesDsui_2112 and Dsui_2113 are separated by 61 nucleotides Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715 _2110 Dsui_2111: Dsui_2111 - cysteine desulfurase-like protein, SufS subfamily, at 2,235,829 to 2,237,721 _2111 Dsui_2112: Dsui_2112 - hypothetical protein, at 2,237,696 to 2,238,631 _2112 Dsui_2113: Dsui_2113 - serine acetyltransferase, at 2,238,693 to 2,239,691 _2113 Position (kb) 2235 2236 2237 2238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2235.771 kb on - strandat 2235.826 kb on + strandat 2235.850 kb on + strandat 2235.976 kb on + strandat 2236.042 kb on - strand, within Dsui_2111at 2236.072 kb on - strand, within Dsui_2111at 2236.083 kb on - strand, within Dsui_2111at 2236.200 kb on - strand, within Dsui_2111at 2236.212 kb on - strand, within Dsui_2111at 2236.241 kb on + strandat 2236.316 kb on + strandat 2236.521 kb on + strand, within Dsui_2111at 2236.540 kb on - strand, within Dsui_2111at 2236.626 kb on - strand, within Dsui_2111at 2236.704 kb on - strand, within Dsui_2111at 2236.782 kb on - strand, within Dsui_2111at 2236.838 kb on + strand, within Dsui_2111at 2236.884 kb on + strandat 2236.990 kb on + strandat 2236.990 kb on + strandat 2236.998 kb on - strand, within Dsui_2111at 2237.011 kb on - strand, within Dsui_2111at 2237.011 kb on - strand, within Dsui_2111at 2237.011 kb on - strandat 2237.157 kb on - strand, within Dsui_2111at 2237.202 kb on - strandat 2237.238 kb on - strandat 2237.315 kb on - strandat 2237.418 kb on + strand, within Dsui_2111at 2237.571 kb on + strandat 2237.698 kb on + strandat 2237.754 kb on + strandat 2237.880 kb on + strandat 2237.895 kb on + strand, within Dsui_2112at 2237.895 kb on + strandat 2238.287 kb on - strandat 2238.297 kb on - strandat 2238.331 kb on + strandat 2238.396 kb on + strandat 2238.396 kb on + strandat 2238.511 kb on + strandat 2238.536 kb on + strandat 2238.706 kb on + strandat 2238.714 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
2,235,771 - -2.3
2,235,826 + -1.5
2,235,850 + +0.5
2,235,976 + +1.0
2,236,042 - Dsui_2111 0.11 -0.8
2,236,072 - Dsui_2111 0.13 -1.6
2,236,083 - Dsui_2111 0.13 -1.3
2,236,200 - Dsui_2111 0.20 -0.4
2,236,212 - Dsui_2111 0.20 -0.4
2,236,241 + -2.8
2,236,316 + +2.1
2,236,521 + Dsui_2111 0.37 +1.1
2,236,540 - Dsui_2111 0.38 -3.5
2,236,626 - Dsui_2111 0.42 -0.7
2,236,704 - Dsui_2111 0.46 +0.1
2,236,782 - Dsui_2111 0.50 +0.7
2,236,838 + Dsui_2111 0.53 -1.2
2,236,884 + -1.3
2,236,990 + -0.3
2,236,990 + -2.7
2,236,998 - Dsui_2111 0.62 -0.5
2,237,011 - Dsui_2111 0.62 -2.4
2,237,011 - Dsui_2111 0.62 +0.0
2,237,011 - +0.3
2,237,157 - Dsui_2111 0.70 -1.4
2,237,202 - -1.4
2,237,238 - -2.7
2,237,315 - +3.2
2,237,418 + Dsui_2111 0.84 -1.3
2,237,571 + +0.8
2,237,698 + -1.9
2,237,754 + +0.6
2,237,880 + -2.1
2,237,895 + Dsui_2112 0.21 -3.9
2,237,895 + +0.9
2,238,287 - -1.7
2,238,297 - -1.1
2,238,331 + +0.6
2,238,396 + -2.3
2,238,396 + -1.7
2,238,511 + -2.3
2,238,536 + -1.4
2,238,706 + +0.0
2,238,714 - -2.4

Or see this region's nucleotide sequence