Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2039 and Dsui_2040 are separated by 26 nucleotides Dsui_2040 and Dsui_2041 are separated by 60 nucleotides Dsui_2041 and Dsui_2042 are separated by 20 nucleotides
Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415
_2039
Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900
_2040
Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746
_2041
Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945
_2042
Position (kb)
2159
2160
2161 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2158.965 kb on + strand at 2158.973 kb on - strand, within Dsui_2039 at 2158.978 kb on - strand, within Dsui_2039 at 2159.225 kb on - strand, within Dsui_2039 at 2159.250 kb on - strand, within Dsui_2039 at 2159.260 kb on + strand, within Dsui_2039 at 2159.268 kb on - strand, within Dsui_2039 at 2159.419 kb on - strand at 2159.429 kb on - strand at 2159.450 kb on + strand at 2159.450 kb on + strand at 2159.458 kb on - strand at 2159.608 kb on + strand, within Dsui_2040 at 2159.615 kb on + strand, within Dsui_2040 at 2159.719 kb on + strand, within Dsui_2040 at 2159.854 kb on - strand, within Dsui_2040 at 2159.872 kb on + strand at 2159.876 kb on + strand at 2159.880 kb on - strand at 2159.945 kb on + strand at 2159.951 kb on - strand at 2159.978 kb on - strand at 2160.064 kb on + strand, within Dsui_2041 at 2160.110 kb on - strand, within Dsui_2041 at 2160.117 kb on - strand, within Dsui_2041 at 2160.119 kb on + strand at 2160.220 kb on - strand, within Dsui_2041 at 2160.246 kb on - strand, within Dsui_2041 at 2160.261 kb on + strand at 2160.269 kb on - strand, within Dsui_2041 at 2160.277 kb on - strand at 2160.324 kb on - strand, within Dsui_2041 at 2160.324 kb on - strand at 2160.460 kb on + strand at 2160.470 kb on + strand at 2160.506 kb on - strand, within Dsui_2041 at 2160.592 kb on - strand at 2160.625 kb on + strand, within Dsui_2041 at 2160.696 kb on - strand at 2160.765 kb on - strand at 2160.789 kb on - strand at 2160.789 kb on - strand at 2160.792 kb on + strand at 2160.792 kb on + strand at 2160.868 kb on + strand at 2160.876 kb on - strand at 2160.876 kb on - strand at 2160.996 kb on + strand at 2161.004 kb on - strand at 2161.041 kb on + strand at 2161.080 kb on + strand at 2161.173 kb on - strand, within Dsui_2042 at 2161.211 kb on + strand, within Dsui_2042 at 2161.305 kb on - strand, within Dsui_2042 at 2161.401 kb on + strand at 2161.565 kb on - strand, within Dsui_2042 at 2161.610 kb on + strand, within Dsui_2042 at 2161.610 kb on + strand at 2161.636 kb on - strand, within Dsui_2042 at 2161.674 kb on - strand at 2161.705 kb on - strand, within Dsui_2042
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 2,158,965 + +0.1 2,158,973 - Dsui_2039 0.66 +1.0 2,158,978 - Dsui_2039 0.66 +1.1 2,159,225 - Dsui_2039 0.85 +1.1 2,159,250 - Dsui_2039 0.87 +1.2 2,159,260 + Dsui_2039 0.88 +0.5 2,159,268 - Dsui_2039 0.89 +0.4 2,159,419 - +1.8 2,159,429 - +1.5 2,159,450 + -1.5 2,159,450 + -1.4 2,159,458 - +1.3 2,159,608 + Dsui_2040 0.36 -0.0 2,159,615 + Dsui_2040 0.38 -0.1 2,159,719 + Dsui_2040 0.60 -1.4 2,159,854 - Dsui_2040 0.90 +1.5 2,159,872 + +0.0 2,159,876 + -2.0 2,159,880 - +1.4 2,159,945 + +0.5 2,159,951 - +1.0 2,159,978 - +0.9 2,160,064 + Dsui_2041 0.13 -0.3 2,160,110 - Dsui_2041 0.19 +3.7 2,160,117 - Dsui_2041 0.20 +1.7 2,160,119 + +2.9 2,160,220 - Dsui_2041 0.33 -0.2 2,160,246 - Dsui_2041 0.36 +1.3 2,160,261 + +0.3 2,160,269 - Dsui_2041 0.39 -0.7 2,160,277 - -1.7 2,160,324 - Dsui_2041 0.46 -0.1 2,160,324 - -1.1 2,160,460 + +0.0 2,160,470 + -1.7 2,160,506 - Dsui_2041 0.69 +0.6 2,160,592 - -1.2 2,160,625 + Dsui_2041 0.84 -3.0 2,160,696 - -1.8 2,160,765 - -1.5 2,160,789 - +0.9 2,160,789 - +0.1 2,160,792 + -2.7 2,160,792 + -1.1 2,160,868 + -2.1 2,160,876 - -1.1 2,160,876 - +0.7 2,160,996 + -3.7 2,161,004 - -0.5 2,161,041 + -2.6 2,161,080 + +0.1 2,161,173 - Dsui_2042 0.34 -1.2 2,161,211 + Dsui_2042 0.38 -1.0 2,161,305 - Dsui_2042 0.46 -1.5 2,161,401 + -1.1 2,161,565 - Dsui_2042 0.68 -0.8 2,161,610 + Dsui_2042 0.72 +0.1 2,161,610 + +1.4 2,161,636 - Dsui_2042 0.74 -0.7 2,161,674 - -1.7 2,161,705 - Dsui_2042 0.80 -1.8
Or see this region's nucleotide sequence