Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1999 and Dsui_2000 are separated by 26 nucleotides Dsui_2000 and Dsui_2001 are separated by 27 nucleotides Dsui_2001 and Dsui_2002 are separated by 11 nucleotides Dsui_2002 and Dsui_2003 are separated by 302 nucleotides
Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830
_1999
Dsui_2000: Dsui_2000 - hypothetical protein, at 2,106,857 to 2,107,624
_2000
Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184
_2001
Dsui_2002: Dsui_2002 - TIGR00645 family protein, at 2,109,196 to 2,109,720
_2002
Dsui_2003: Dsui_2003 - acetate--CoA ligase, at 2,110,023 to 2,111,999
_2003
Position (kb)
2107
2108
2109
2110 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2106.687 kb on - strand, within Dsui_1999 at 2106.714 kb on + strand at 2106.742 kb on + strand, within Dsui_1999 at 2106.787 kb on - strand, within Dsui_1999 at 2106.793 kb on - strand, within Dsui_1999 at 2106.796 kb on - strand at 2106.854 kb on + strand at 2106.973 kb on - strand, within Dsui_2000 at 2107.017 kb on - strand, within Dsui_2000 at 2107.048 kb on + strand, within Dsui_2000 at 2107.084 kb on + strand, within Dsui_2000 at 2107.114 kb on - strand, within Dsui_2000 at 2107.153 kb on + strand, within Dsui_2000 at 2107.170 kb on - strand, within Dsui_2000 at 2107.223 kb on + strand at 2107.239 kb on - strand, within Dsui_2000 at 2107.290 kb on - strand, within Dsui_2000 at 2107.435 kb on + strand, within Dsui_2000 at 2107.443 kb on - strand, within Dsui_2000 at 2107.495 kb on - strand, within Dsui_2000 at 2107.658 kb on - strand at 2107.701 kb on - strand at 2107.716 kb on - strand at 2109.202 kb on - strand at 2109.207 kb on - strand at 2109.214 kb on - strand at 2109.214 kb on - strand at 2109.221 kb on - strand at 2109.306 kb on - strand, within Dsui_2002 at 2109.338 kb on + strand at 2109.346 kb on - strand, within Dsui_2002 at 2109.559 kb on - strand, within Dsui_2002 at 2109.581 kb on + strand, within Dsui_2002 at 2109.592 kb on + strand, within Dsui_2002 at 2109.642 kb on + strand at 2109.642 kb on + strand at 2109.642 kb on + strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.655 kb on - strand, within Dsui_2002 at 2109.684 kb on - strand at 2109.747 kb on - strand at 2109.756 kb on - strand at 2109.814 kb on + strand at 2109.814 kb on + strand at 2109.833 kb on + strand at 2109.833 kb on + strand at 2109.841 kb on - strand at 2109.841 kb on - strand at 2109.872 kb on + strand at 2109.892 kb on + strand at 2109.903 kb on + strand at 2109.961 kb on - strand at 2110.004 kb on + strand at 2110.006 kb on + strand at 2110.006 kb on + strand at 2110.011 kb on + strand at 2110.019 kb on + strand at 2110.031 kb on + strand at 2110.039 kb on - strand at 2110.059 kb on + strand at 2110.096 kb on - strand at 2110.099 kb on + strand at 2110.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 2,106,687 - Dsui_1999 0.58 +0.7 2,106,714 + +0.7 2,106,742 + Dsui_1999 0.74 -1.9 2,106,787 - Dsui_1999 0.87 +0.8 2,106,793 - Dsui_1999 0.89 +0.8 2,106,796 - +0.3 2,106,854 + -1.6 2,106,973 - Dsui_2000 0.15 +1.1 2,107,017 - Dsui_2000 0.21 +1.5 2,107,048 + Dsui_2000 0.25 -0.7 2,107,084 + Dsui_2000 0.30 -0.2 2,107,114 - Dsui_2000 0.33 +0.9 2,107,153 + Dsui_2000 0.39 -0.8 2,107,170 - Dsui_2000 0.41 +1.1 2,107,223 + -1.6 2,107,239 - Dsui_2000 0.50 +0.6 2,107,290 - Dsui_2000 0.56 +0.1 2,107,435 + Dsui_2000 0.75 -1.3 2,107,443 - Dsui_2000 0.76 +0.3 2,107,495 - Dsui_2000 0.83 +1.6 2,107,658 - +1.2 2,107,701 - +0.4 2,107,716 - -0.5 2,109,202 - -0.8 2,109,207 - +2.0 2,109,214 - -0.7 2,109,214 - +2.1 2,109,221 - +0.7 2,109,306 - Dsui_2002 0.21 +0.3 2,109,338 + -2.1 2,109,346 - Dsui_2002 0.29 +1.4 2,109,559 - Dsui_2002 0.69 +1.2 2,109,581 + Dsui_2002 0.73 -1.7 2,109,592 + Dsui_2002 0.75 +0.3 2,109,642 + +0.7 2,109,642 + -1.3 2,109,642 + Dsui_2002 0.85 -3.0 2,109,650 - Dsui_2002 0.86 +2.1 2,109,650 - Dsui_2002 0.86 +1.1 2,109,655 - Dsui_2002 0.87 +1.0 2,109,684 - +0.6 2,109,747 - +4.5 2,109,756 - +1.1 2,109,814 + -3.8 2,109,814 + -2.6 2,109,833 + +1.3 2,109,833 + +1.9 2,109,841 - -2.1 2,109,841 - -0.1 2,109,872 + +0.8 2,109,892 + +1.1 2,109,903 + +0.9 2,109,961 - -2.0 2,110,004 + +1.4 2,110,006 + +0.5 2,110,006 + +0.8 2,110,011 + -1.1 2,110,019 + +0.5 2,110,031 + +1.0 2,110,039 - -1.7 2,110,059 + +0.5 2,110,096 - -2.8 2,110,099 + +1.3 2,110,127 + +0.6
Or see this region's nucleotide sequence