Strain Fitness in Dechlorosoma suillum PS around Dsui_1801

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1800 and Dsui_1801 are separated by 151 nucleotidesDsui_1801 and Dsui_1802 are separated by 121 nucleotidesDsui_1802 and Dsui_1803 are separated by 163 nucleotides Dsui_1800: Dsui_1800 - transcriptional regulator, at 1,899,561 to 1,900,253 _1800 Dsui_1801: Dsui_1801 - ATPase involved in chromosome partitioning, at 1,900,405 to 1,901,022 _1801 Dsui_1802: Dsui_1802 - tRNA-Met, at 1,901,144 to 1,901,220 _1802 Dsui_1803: Dsui_1803 - 16S ribosomal RNA, at 1,901,384 to 1,902,805 _1803 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1899.651 kb on + strand, within Dsui_1800at 1899.651 kb on + strand, within Dsui_1800at 1899.665 kb on - strand, within Dsui_1800at 1899.712 kb on + strand, within Dsui_1800at 1899.719 kb on + strand, within Dsui_1800at 1899.727 kb on - strand, within Dsui_1800at 1899.757 kb on + strand, within Dsui_1800at 1899.774 kb on + strand, within Dsui_1800at 1899.776 kb on + strand, within Dsui_1800at 1899.776 kb on + strand, within Dsui_1800at 1899.776 kb on + strand, within Dsui_1800at 1899.784 kb on - strand, within Dsui_1800at 1899.784 kb on - strand, within Dsui_1800at 1899.854 kb on + strand, within Dsui_1800at 1899.862 kb on - strand, within Dsui_1800at 1899.904 kb on + strand, within Dsui_1800at 1899.904 kb on - strand, within Dsui_1800at 1899.946 kb on + strand, within Dsui_1800at 1900.007 kb on - strand, within Dsui_1800at 1900.027 kb on - strand, within Dsui_1800at 1900.027 kb on - strand, within Dsui_1800at 1900.033 kb on + strandat 1900.048 kb on - strand, within Dsui_1800at 1900.048 kb on - strand, within Dsui_1800at 1900.048 kb on - strand, within Dsui_1800at 1900.059 kb on - strand, within Dsui_1800at 1900.071 kb on + strand, within Dsui_1800at 1900.084 kb on - strand, within Dsui_1800at 1900.107 kb on - strand, within Dsui_1800at 1900.135 kb on + strand, within Dsui_1800at 1900.143 kb on - strand, within Dsui_1800at 1900.143 kb on - strand, within Dsui_1800at 1900.143 kb on - strand, within Dsui_1800at 1900.143 kb on - strand, within Dsui_1800at 1900.195 kb on - strandat 1900.261 kb on - strandat 1900.345 kb on + strandat 1900.354 kb on + strandat 1900.396 kb on + strandat 1900.396 kb on + strandat 1900.399 kb on - strandat 1900.409 kb on + strandat 1900.428 kb on + strandat 1900.439 kb on + strandat 1900.456 kb on - strandat 1900.486 kb on + strand, within Dsui_1801at 1900.486 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.544 kb on + strand, within Dsui_1801at 1900.573 kb on + strand, within Dsui_1801at 1900.660 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.685 kb on + strand, within Dsui_1801at 1900.704 kb on + strand, within Dsui_1801at 1900.705 kb on - strand, within Dsui_1801at 1900.761 kb on - strand, within Dsui_1801at 1900.899 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.923 kb on + strand, within Dsui_1801at 1900.968 kb on + strandat 1900.979 kb on + strandat 1901.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,899,651 + Dsui_1800 0.13 -2.0
1,899,651 + Dsui_1800 0.13 -0.6
1,899,665 - Dsui_1800 0.15 -1.3
1,899,712 + Dsui_1800 0.22 -1.6
1,899,719 + Dsui_1800 0.23 -1.6
1,899,727 - Dsui_1800 0.24 -1.3
1,899,757 + Dsui_1800 0.28 -3.1
1,899,774 + Dsui_1800 0.31 -1.9
1,899,776 + Dsui_1800 0.31 -1.2
1,899,776 + Dsui_1800 0.31 -2.2
1,899,776 + Dsui_1800 0.31 -2.5
1,899,784 - Dsui_1800 0.32 -0.6
1,899,784 - Dsui_1800 0.32 -1.0
1,899,854 + Dsui_1800 0.42 -1.3
1,899,862 - Dsui_1800 0.43 -1.4
1,899,904 + Dsui_1800 0.49 -3.4
1,899,904 - Dsui_1800 0.49 -1.7
1,899,946 + Dsui_1800 0.56 -1.7
1,900,007 - Dsui_1800 0.64 -0.3
1,900,027 - Dsui_1800 0.67 -2.6
1,900,027 - Dsui_1800 0.67 -2.6
1,900,033 + -1.8
1,900,048 - Dsui_1800 0.70 -1.1
1,900,048 - Dsui_1800 0.70 -0.6
1,900,048 - Dsui_1800 0.70 -0.4
1,900,059 - Dsui_1800 0.72 -0.9
1,900,071 + Dsui_1800 0.74 -3.2
1,900,084 - Dsui_1800 0.75 -1.4
1,900,107 - Dsui_1800 0.79 -1.2
1,900,135 + Dsui_1800 0.83 -3.4
1,900,143 - Dsui_1800 0.84 -0.5
1,900,143 - Dsui_1800 0.84 -1.9
1,900,143 - Dsui_1800 0.84 -1.0
1,900,143 - Dsui_1800 0.84 -1.5
1,900,195 - -1.0
1,900,261 - +0.7
1,900,345 + -0.9
1,900,354 + +0.3
1,900,396 + +1.4
1,900,396 + -0.4
1,900,399 - -3.6
1,900,409 + -1.3
1,900,428 + -0.2
1,900,439 + +1.7
1,900,456 - -2.4
1,900,486 + Dsui_1801 0.13 +0.7
1,900,486 + Dsui_1801 0.13 +0.5
1,900,499 + Dsui_1801 0.15 +0.1
1,900,499 + Dsui_1801 0.15 +0.4
1,900,499 + Dsui_1801 0.15 +0.2
1,900,499 + Dsui_1801 0.15 +0.1
1,900,499 + Dsui_1801 0.15 +0.1
1,900,499 + Dsui_1801 0.15 -0.6
1,900,544 + Dsui_1801 0.22 +0.6
1,900,573 + Dsui_1801 0.27 +0.2
1,900,660 + Dsui_1801 0.41 +0.2
1,900,667 + Dsui_1801 0.42 -0.1
1,900,667 + Dsui_1801 0.42 +0.2
1,900,667 + Dsui_1801 0.42 +0.3
1,900,667 + Dsui_1801 0.42 +0.6
1,900,667 + Dsui_1801 0.42 -0.6
1,900,675 - Dsui_1801 0.44 -3.7
1,900,675 - Dsui_1801 0.44 -1.0
1,900,685 + Dsui_1801 0.45 -0.5
1,900,704 + Dsui_1801 0.48 -0.1
1,900,705 - Dsui_1801 0.49 +0.5
1,900,761 - Dsui_1801 0.58 -2.7
1,900,899 + Dsui_1801 0.80 -0.4
1,900,906 + Dsui_1801 0.81 -0.1
1,900,906 + Dsui_1801 0.81 +0.6
1,900,914 - Dsui_1801 0.82 -3.4
1,900,914 - Dsui_1801 0.82 -2.7
1,900,914 - Dsui_1801 0.82 -4.3
1,900,914 - Dsui_1801 0.82 +1.1
1,900,916 + Dsui_1801 0.83 +0.3
1,900,916 + Dsui_1801 0.83 +0.6
1,900,923 + Dsui_1801 0.84 +0.8
1,900,968 + -0.6
1,900,979 + +0.1
1,901,019 - -2.4

Or see this region's nucleotide sequence