Strain Fitness in Dechlorosoma suillum PS around Dsui_1717

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1716 and Dsui_1717 are separated by 179 nucleotidesDsui_1717 and Dsui_1718 are separated by 21 nucleotidesDsui_1718 and Dsui_1719 are separated by 18 nucleotides Dsui_1716: Dsui_1716 - methyl-accepting chemotaxis protein, at 1,805,245 to 1,806,825 _1716 Dsui_1717: Dsui_1717 - chemotaxis signal transduction protein, at 1,807,005 to 1,807,973 _1717 Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933 _1718 Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344 _1719 Position (kb) 1807 1808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1806.011 kb on - strand, within Dsui_1716at 1806.027 kb on - strand, within Dsui_1716at 1806.123 kb on - strand, within Dsui_1716at 1806.158 kb on + strand, within Dsui_1716at 1806.166 kb on - strand, within Dsui_1716at 1806.200 kb on - strand, within Dsui_1716at 1806.218 kb on + strand, within Dsui_1716at 1806.306 kb on - strandat 1806.376 kb on + strand, within Dsui_1716at 1806.472 kb on + strand, within Dsui_1716at 1806.537 kb on - strand, within Dsui_1716at 1806.564 kb on + strand, within Dsui_1716at 1806.571 kb on + strand, within Dsui_1716at 1806.580 kb on - strand, within Dsui_1716at 1806.580 kb on - strand, within Dsui_1716at 1806.607 kb on + strand, within Dsui_1716at 1806.615 kb on - strand, within Dsui_1716at 1806.650 kb on - strand, within Dsui_1716at 1806.692 kb on - strandat 1806.710 kb on - strandat 1806.771 kb on + strandat 1806.774 kb on - strandat 1806.783 kb on + strandat 1806.783 kb on + strandat 1806.783 kb on + strandat 1806.783 kb on + strandat 1806.791 kb on - strandat 1806.791 kb on - strandat 1806.791 kb on - strandat 1806.791 kb on - strandat 1806.819 kb on + strandat 1806.882 kb on + strandat 1806.882 kb on + strandat 1806.889 kb on + strandat 1806.890 kb on - strandat 1806.999 kb on + strandat 1806.999 kb on - strandat 1807.001 kb on + strandat 1807.002 kb on - strandat 1807.002 kb on - strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.006 kb on + strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.014 kb on - strandat 1807.016 kb on + strandat 1807.016 kb on + strandat 1807.016 kb on + strandat 1807.024 kb on - strandat 1807.024 kb on - strandat 1807.024 kb on - strandat 1807.054 kb on + strandat 1807.117 kb on + strand, within Dsui_1717at 1807.166 kb on + strand, within Dsui_1717at 1807.205 kb on - strand, within Dsui_1717at 1807.222 kb on + strand, within Dsui_1717at 1807.263 kb on + strand, within Dsui_1717at 1807.271 kb on - strand, within Dsui_1717at 1807.345 kb on + strand, within Dsui_1717at 1807.393 kb on + strand, within Dsui_1717at 1807.600 kb on + strand, within Dsui_1717at 1807.726 kb on + strand, within Dsui_1717at 1807.726 kb on + strand, within Dsui_1717at 1807.726 kb on + strand, within Dsui_1717at 1807.726 kb on + strand, within Dsui_1717at 1807.734 kb on - strand, within Dsui_1717at 1807.734 kb on - strand, within Dsui_1717at 1807.765 kb on + strand, within Dsui_1717at 1807.773 kb on - strand, within Dsui_1717at 1807.784 kb on + strand, within Dsui_1717at 1807.792 kb on - strand, within Dsui_1717at 1807.792 kb on - strand, within Dsui_1717at 1807.846 kb on + strand, within Dsui_1717at 1807.942 kb on + strandat 1807.950 kb on - strandat 1807.968 kb on + strandat 1807.968 kb on + strandat 1807.970 kb on - strandat 1807.978 kb on + strandat 1808.046 kb on + strandat 1808.046 kb on - strandat 1808.054 kb on - strandat 1808.073 kb on + strandat 1808.074 kb on - strandat 1808.118 kb on - strand, within Dsui_1718at 1808.127 kb on - strand, within Dsui_1718at 1808.148 kb on + strand, within Dsui_1718at 1808.154 kb on - strand, within Dsui_1718at 1808.235 kb on + strand, within Dsui_1718at 1808.281 kb on - strand, within Dsui_1718at 1808.437 kb on + strand, within Dsui_1718at 1808.648 kb on - strand, within Dsui_1718at 1808.709 kb on + strand, within Dsui_1718at 1808.722 kb on - strand, within Dsui_1718at 1808.749 kb on + strand, within Dsui_1718at 1808.749 kb on + strand, within Dsui_1718at 1808.846 kb on + strandat 1808.921 kb on + strandat 1808.943 kb on + strandat 1808.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,806,011 - Dsui_1716 0.48 +0.5
1,806,027 - Dsui_1716 0.49 -3.9
1,806,123 - Dsui_1716 0.56 -0.6
1,806,158 + Dsui_1716 0.58 +0.7
1,806,166 - Dsui_1716 0.58 -0.4
1,806,200 - Dsui_1716 0.60 +0.0
1,806,218 + Dsui_1716 0.62 +1.2
1,806,306 - -1.5
1,806,376 + Dsui_1716 0.72 +0.5
1,806,472 + Dsui_1716 0.78 +0.8
1,806,537 - Dsui_1716 0.82 -0.1
1,806,564 + Dsui_1716 0.83 +0.0
1,806,571 + Dsui_1716 0.84 -0.2
1,806,580 - Dsui_1716 0.84 -0.5
1,806,580 - Dsui_1716 0.84 +0.8
1,806,607 + Dsui_1716 0.86 +0.8
1,806,615 - Dsui_1716 0.87 +1.1
1,806,650 - Dsui_1716 0.89 +0.1
1,806,692 - +0.7
1,806,710 - -0.2
1,806,771 + +0.7
1,806,774 - -1.7
1,806,783 + +0.5
1,806,783 + -0.2
1,806,783 + +0.7
1,806,783 + +0.0
1,806,791 - +1.7
1,806,791 - -2.6
1,806,791 - -0.8
1,806,791 - +0.5
1,806,819 + +1.4
1,806,882 + +0.2
1,806,882 + +1.0
1,806,889 + +0.9
1,806,890 - -1.2
1,806,999 + +1.2
1,806,999 - -0.3
1,807,001 + +1.0
1,807,002 - -0.9
1,807,002 - -1.5
1,807,006 + +0.0
1,807,006 + +1.2
1,807,006 + +0.4
1,807,006 + +1.1
1,807,006 + +2.1
1,807,006 + +1.5
1,807,006 + +1.2
1,807,006 + +0.9
1,807,006 + +0.9
1,807,006 + +1.3
1,807,006 + +1.1
1,807,006 + +1.8
1,807,006 + +1.1
1,807,006 + +0.7
1,807,006 + +1.1
1,807,006 + -0.5
1,807,006 + +0.8
1,807,006 + +1.1
1,807,006 + +0.5
1,807,006 + +1.1
1,807,006 + +0.5
1,807,006 + +0.3
1,807,006 + +1.3
1,807,006 + +1.1
1,807,006 + +1.2
1,807,006 + -0.9
1,807,006 + +1.0
1,807,006 + +1.3
1,807,006 + +0.7
1,807,006 + +1.1
1,807,006 + +0.9
1,807,006 + +1.2
1,807,006 + +1.1
1,807,006 + +1.0
1,807,006 + +1.5
1,807,006 + +0.5
1,807,006 + +1.0
1,807,006 + +1.6
1,807,006 + +1.3
1,807,006 + +0.6
1,807,006 + +0.7
1,807,006 + +1.1
1,807,006 + +1.2
1,807,006 + +1.2
1,807,006 + +1.3
1,807,006 + +1.8
1,807,006 + +1.2
1,807,006 + +0.4
1,807,006 + +0.8
1,807,006 + +1.8
1,807,006 + +0.6
1,807,006 + +1.3
1,807,006 + +1.1
1,807,006 + +0.4
1,807,006 + +0.1
1,807,006 + -0.1
1,807,006 + +0.2
1,807,006 + +1.3
1,807,006 + +2.3
1,807,006 + +0.9
1,807,014 - +0.4
1,807,014 - +0.3
1,807,014 - -0.0
1,807,014 - +0.8
1,807,014 - -0.4
1,807,014 - -1.9
1,807,014 - -2.8
1,807,014 - -1.1
1,807,014 - +1.4
1,807,014 - +1.1
1,807,014 - -0.7
1,807,014 - -0.8
1,807,014 - -2.4
1,807,014 - -0.9
1,807,014 - +0.4
1,807,014 - -0.4
1,807,014 - +0.0
1,807,014 - +0.8
1,807,014 - -0.6
1,807,014 - -3.2
1,807,014 - +0.8
1,807,014 - +0.5
1,807,014 - -0.4
1,807,014 - -1.6
1,807,014 - +1.1
1,807,014 - -1.3
1,807,014 - +0.3
1,807,014 - +0.4
1,807,014 - -0.8
1,807,014 - -0.5
1,807,014 - +0.3
1,807,014 - +1.0
1,807,014 - -0.4
1,807,016 + +1.4
1,807,016 + +0.5
1,807,016 + +0.2
1,807,024 - +0.1
1,807,024 - -0.0
1,807,024 - -1.2
1,807,054 + +0.1
1,807,117 + Dsui_1717 0.12 +1.1
1,807,166 + Dsui_1717 0.17 +0.3
1,807,205 - Dsui_1717 0.21 +0.1
1,807,222 + Dsui_1717 0.22 +0.8
1,807,263 + Dsui_1717 0.27 +0.8
1,807,271 - Dsui_1717 0.27 +1.3
1,807,345 + Dsui_1717 0.35 +1.3
1,807,393 + Dsui_1717 0.40 +2.1
1,807,600 + Dsui_1717 0.61 +1.1
1,807,726 + Dsui_1717 0.74 +0.4
1,807,726 + Dsui_1717 0.74 +1.1
1,807,726 + Dsui_1717 0.74 +0.7
1,807,726 + Dsui_1717 0.74 +0.7
1,807,734 - Dsui_1717 0.75 +1.0
1,807,734 - Dsui_1717 0.75 -1.1
1,807,765 + Dsui_1717 0.78 +1.4
1,807,773 - Dsui_1717 0.79 +0.3
1,807,784 + Dsui_1717 0.80 -0.1
1,807,792 - Dsui_1717 0.81 -0.9
1,807,792 - Dsui_1717 0.81 +0.5
1,807,846 + Dsui_1717 0.87 +0.8
1,807,942 + +1.0
1,807,950 - +1.1
1,807,968 + +0.5
1,807,968 + +1.1
1,807,970 - -0.7
1,807,978 + +0.8
1,808,046 + +0.8
1,808,046 - +0.0
1,808,054 - +0.1
1,808,073 + +0.8
1,808,074 - +0.5
1,808,118 - Dsui_1718 0.13 +0.1
1,808,127 - Dsui_1718 0.14 +0.5
1,808,148 + Dsui_1718 0.16 +0.9
1,808,154 - Dsui_1718 0.17 +0.4
1,808,235 + Dsui_1718 0.26 +1.2
1,808,281 - Dsui_1718 0.30 +0.4
1,808,437 + Dsui_1718 0.47 +0.8
1,808,648 - Dsui_1718 0.70 +0.6
1,808,709 + Dsui_1718 0.76 +1.1
1,808,722 - Dsui_1718 0.77 +0.3
1,808,749 + Dsui_1718 0.80 +1.1
1,808,749 + Dsui_1718 0.80 +1.3
1,808,846 + +0.8
1,808,921 + +1.9
1,808,943 + +1.1
1,808,961 - +0.6

Or see this region's nucleotide sequence