Strain Fitness in Dechlorosoma suillum PS around Dsui_1554

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1552 and Dsui_1553 are separated by 1 nucleotidesDsui_1553 and Dsui_1554 are separated by 61 nucleotidesDsui_1554 and Dsui_1555 are separated by 196 nucleotides Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259 _1552 Dsui_1553: Dsui_1553 - regulator of competence-specific genes, at 1,616,261 to 1,616,635 _1553 Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519 _1554 Dsui_1555: Dsui_1555 - cation/multidrug efflux pump, at 1,619,716 to 1,622,787 _1555 Position (kb) 1616 1617 1618 1619 1620Strain fitness (log2 ratio) -3 -2 -1 0 1at 1616.279 kb on - strandat 1616.317 kb on - strand, within Dsui_1553at 1616.442 kb on + strand, within Dsui_1553at 1616.466 kb on + strand, within Dsui_1553at 1616.576 kb on - strandat 1616.935 kb on - strandat 1617.172 kb on + strand, within Dsui_1554at 1617.248 kb on + strand, within Dsui_1554at 1617.257 kb on - strand, within Dsui_1554at 1617.285 kb on + strand, within Dsui_1554at 1617.320 kb on + strand, within Dsui_1554at 1617.392 kb on + strand, within Dsui_1554at 1617.392 kb on + strand, within Dsui_1554at 1617.400 kb on - strand, within Dsui_1554at 1617.468 kb on + strandat 1617.541 kb on - strand, within Dsui_1554at 1617.547 kb on + strand, within Dsui_1554at 1617.614 kb on + strandat 1617.640 kb on + strand, within Dsui_1554at 1617.661 kb on + strand, within Dsui_1554at 1617.887 kb on - strandat 1617.933 kb on - strand, within Dsui_1554at 1617.993 kb on + strandat 1617.993 kb on + strand, within Dsui_1554at 1618.143 kb on - strand, within Dsui_1554at 1618.278 kb on - strand, within Dsui_1554at 1618.357 kb on - strand, within Dsui_1554at 1618.387 kb on - strand, within Dsui_1554at 1618.394 kb on + strand, within Dsui_1554at 1618.402 kb on - strand, within Dsui_1554at 1618.468 kb on + strand, within Dsui_1554at 1618.501 kb on - strand, within Dsui_1554at 1618.609 kb on - strandat 1618.611 kb on + strand, within Dsui_1554at 1618.664 kb on + strandat 1618.853 kb on - strandat 1618.984 kb on - strand, within Dsui_1554at 1619.078 kb on - strandat 1619.106 kb on - strand, within Dsui_1554at 1619.145 kb on - strand, within Dsui_1554at 1619.237 kb on + strandat 1619.248 kb on + strandat 1619.330 kb on - strandat 1619.789 kb on - strandat 1619.852 kb on - strandat 1620.057 kb on + strand, within Dsui_1555at 1620.065 kb on - strand, within Dsui_1555at 1620.072 kb on + strand, within Dsui_1555at 1620.090 kb on + strand, within Dsui_1555at 1620.182 kb on + strand, within Dsui_1555at 1620.182 kb on + strand, within Dsui_1555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
1,616,279 - -2.1
1,616,317 - Dsui_1553 0.15 -0.6
1,616,442 + Dsui_1553 0.48 +0.5
1,616,466 + Dsui_1553 0.55 +0.2
1,616,576 - +1.4
1,616,935 - -3.4
1,617,172 + Dsui_1554 0.17 +1.0
1,617,248 + Dsui_1554 0.20 -0.5
1,617,257 - Dsui_1554 0.20 +0.6
1,617,285 + Dsui_1554 0.21 -0.7
1,617,320 + Dsui_1554 0.22 +1.3
1,617,392 + Dsui_1554 0.25 -0.5
1,617,392 + Dsui_1554 0.25 -0.2
1,617,400 - Dsui_1554 0.25 -0.5
1,617,468 + +0.8
1,617,541 - Dsui_1554 0.30 +0.0
1,617,547 + Dsui_1554 0.30 -0.2
1,617,614 + -0.8
1,617,640 + Dsui_1554 0.33 +0.3
1,617,661 + Dsui_1554 0.34 -1.0
1,617,887 - -0.2
1,617,933 - Dsui_1554 0.44 -0.3
1,617,993 + -0.8
1,617,993 + Dsui_1554 0.46 -0.7
1,618,143 - Dsui_1554 0.51 -2.3
1,618,278 - Dsui_1554 0.56 -0.6
1,618,357 - Dsui_1554 0.59 +0.7
1,618,387 - Dsui_1554 0.60 -0.3
1,618,394 + Dsui_1554 0.60 +0.4
1,618,402 - Dsui_1554 0.60 +0.8
1,618,468 + Dsui_1554 0.63 +1.0
1,618,501 - Dsui_1554 0.64 +0.4
1,618,609 - -0.3
1,618,611 + Dsui_1554 0.68 +0.5
1,618,664 + -0.8
1,618,853 - -0.9
1,618,984 - Dsui_1554 0.81 -0.6
1,619,078 - +0.6
1,619,106 - Dsui_1554 0.85 -0.6
1,619,145 - Dsui_1554 0.87 +0.5
1,619,237 + -0.2
1,619,248 + +1.0
1,619,330 - -0.2
1,619,789 - +0.9
1,619,852 - +0.7
1,620,057 + Dsui_1555 0.11 -2.8
1,620,065 - Dsui_1555 0.11 +0.4
1,620,072 + Dsui_1555 0.12 -0.0
1,620,090 + Dsui_1555 0.12 -0.3
1,620,182 + Dsui_1555 0.15 +1.1
1,620,182 + Dsui_1555 0.15 -0.2

Or see this region's nucleotide sequence