Strain Fitness in Dechlorosoma suillum PS around Dsui_1445

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1443 and Dsui_1444 are separated by 233 nucleotidesDsui_1444 and Dsui_1445 are separated by 51 nucleotidesDsui_1445 and Dsui_1446 are separated by 11 nucleotides Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455 _1443 Dsui_1444: Dsui_1444 - Protein of unknown function (DUF2889), at 1,499,689 to 1,500,240 _1444 Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452 _1445 Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360 _1446 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1499.331 kb on - strandat 1499.662 kb on - strandat 1499.828 kb on + strand, within Dsui_1444at 1499.864 kb on + strand, within Dsui_1444at 1499.929 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.939 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.968 kb on + strand, within Dsui_1444at 1499.976 kb on - strandat 1499.976 kb on - strand, within Dsui_1444at 1499.986 kb on + strand, within Dsui_1444at 1499.987 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.040 kb on + strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.058 kb on - strand, within Dsui_1444at 1500.069 kb on + strand, within Dsui_1444at 1500.102 kb on - strandat 1500.193 kb on + strandat 1500.201 kb on - strandat 1500.201 kb on - strandat 1500.243 kb on - strandat 1500.249 kb on + strandat 1500.249 kb on + strandat 1500.312 kb on + strandat 1500.362 kb on - strandat 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.651 kb on - strand, within Dsui_1445at 1500.770 kb on + strand, within Dsui_1445at 1500.923 kb on - strand, within Dsui_1445at 1501.115 kb on + strand, within Dsui_1445at 1501.123 kb on - strand, within Dsui_1445at 1501.229 kb on - strand, within Dsui_1445at 1501.412 kb on + strandat 1501.448 kb on + strandat 1501.448 kb on + strandat 1501.456 kb on - strandat 1501.493 kb on + strandat 1501.493 kb on + strandat 1501.628 kb on + strand, within Dsui_1446at 1501.861 kb on + strand, within Dsui_1446at 1501.869 kb on - strand, within Dsui_1446at 1502.006 kb on + strand, within Dsui_1446at 1502.052 kb on - strand, within Dsui_1446at 1502.261 kb on - strand, within Dsui_1446

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,499,331 - -0.1
1,499,662 - -1.0
1,499,828 + Dsui_1444 0.25 +1.2
1,499,864 + Dsui_1444 0.32 +1.1
1,499,929 + Dsui_1444 0.43 +0.7
1,499,939 + Dsui_1444 0.45 +0.6
1,499,939 + Dsui_1444 0.45 +1.0
1,499,939 + Dsui_1444 0.45 +0.7
1,499,939 + Dsui_1444 0.45 +1.3
1,499,968 + Dsui_1444 0.51 +1.3
1,499,968 + Dsui_1444 0.51 +0.0
1,499,976 - +0.2
1,499,976 - Dsui_1444 0.52 +0.8
1,499,986 + Dsui_1444 0.54 +1.1
1,499,987 + Dsui_1444 0.54 +1.8
1,500,040 + Dsui_1444 0.64 +2.8
1,500,040 + Dsui_1444 0.64 +0.8
1,500,058 - Dsui_1444 0.67 -1.1
1,500,058 - Dsui_1444 0.67 -0.2
1,500,069 + Dsui_1444 0.69 +1.6
1,500,102 - +1.7
1,500,193 + +2.0
1,500,201 - -2.4
1,500,201 - -1.7
1,500,243 - -0.7
1,500,249 + -2.1
1,500,249 + +0.9
1,500,312 + +0.9
1,500,362 - +0.9
1,500,643 + Dsui_1445 0.30 -0.1
1,500,643 + Dsui_1445 0.30 +0.9
1,500,643 + Dsui_1445 0.30 +0.9
1,500,651 - Dsui_1445 0.31 +0.9
1,500,770 + Dsui_1445 0.41 -0.1
1,500,923 - Dsui_1445 0.54 +0.9
1,501,115 + Dsui_1445 0.71 -1.1
1,501,123 - Dsui_1445 0.72 -1.1
1,501,229 - Dsui_1445 0.81 -1.7
1,501,412 + -0.1
1,501,448 + -1.3
1,501,448 + -3.1
1,501,456 - -1.4
1,501,493 + -0.7
1,501,493 + -1.1
1,501,628 + Dsui_1446 0.18 -2.4
1,501,861 + Dsui_1446 0.44 +0.9
1,501,869 - Dsui_1446 0.45 -1.7
1,502,006 + Dsui_1446 0.60 -1.7
1,502,052 - Dsui_1446 0.66 -1.1
1,502,261 - Dsui_1446 0.89 -1.9

Or see this region's nucleotide sequence