Strain Fitness in Dechlorosoma suillum PS around Dsui_1371

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1370 and Dsui_1371 are separated by 103 nucleotidesDsui_1371 and Dsui_1372 are separated by 9 nucleotides Dsui_1370: Dsui_1370 - putative permease, DMT superfamily, at 1,423,349 to 1,424,251 _1370 Dsui_1371: Dsui_1371 - transcriptional regulator, at 1,424,355 to 1,425,254 _1371 Dsui_1372: Dsui_1372 - methyl-accepting chemotaxis protein, at 1,425,264 to 1,426,883 _1372 Position (kb) 1424 1425 1426Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1423.369 kb on + strandat 1423.472 kb on - strandat 1423.496 kb on + strand, within Dsui_1370at 1423.557 kb on + strandat 1423.565 kb on - strand, within Dsui_1370at 1423.569 kb on - strand, within Dsui_1370at 1423.613 kb on - strand, within Dsui_1370at 1423.641 kb on - strand, within Dsui_1370at 1423.772 kb on - strandat 1423.828 kb on - strandat 1423.943 kb on + strand, within Dsui_1370at 1423.953 kb on + strand, within Dsui_1370at 1423.966 kb on - strand, within Dsui_1370at 1423.971 kb on - strand, within Dsui_1370at 1424.107 kb on + strand, within Dsui_1370at 1424.135 kb on + strandat 1424.156 kb on - strandat 1424.164 kb on + strandat 1424.258 kb on + strandat 1424.286 kb on - strandat 1424.289 kb on + strandat 1424.444 kb on - strandat 1424.457 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.638 kb on + strand, within Dsui_1371at 1424.646 kb on - strandat 1424.684 kb on - strand, within Dsui_1371at 1424.707 kb on + strand, within Dsui_1371at 1424.730 kb on + strand, within Dsui_1371at 1424.866 kb on - strand, within Dsui_1371at 1424.900 kb on + strand, within Dsui_1371at 1424.921 kb on - strand, within Dsui_1371at 1424.958 kb on + strand, within Dsui_1371at 1424.966 kb on - strand, within Dsui_1371at 1425.040 kb on + strand, within Dsui_1371at 1425.056 kb on - strand, within Dsui_1371at 1425.060 kb on + strand, within Dsui_1371at 1425.138 kb on - strand, within Dsui_1371at 1425.142 kb on - strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.210 kb on + strandat 1425.218 kb on - strandat 1425.304 kb on - strandat 1425.416 kb on - strandat 1425.446 kb on + strand, within Dsui_1372at 1425.484 kb on + strand, within Dsui_1372at 1425.558 kb on - strand, within Dsui_1372at 1425.580 kb on - strand, within Dsui_1372at 1425.584 kb on + strand, within Dsui_1372at 1425.614 kb on - strand, within Dsui_1372at 1425.618 kb on + strand, within Dsui_1372at 1425.742 kb on + strandat 1425.848 kb on - strandat 1425.872 kb on - strand, within Dsui_1372at 1425.881 kb on - strand, within Dsui_1372at 1425.995 kb on - strand, within Dsui_1372at 1426.055 kb on + strand, within Dsui_1372

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,423,369 + +0.2
1,423,472 - +0.1
1,423,496 + Dsui_1370 0.16 -0.8
1,423,557 + +2.3
1,423,565 - Dsui_1370 0.24 -1.3
1,423,569 - Dsui_1370 0.24 +0.8
1,423,613 - Dsui_1370 0.29 -0.9
1,423,641 - Dsui_1370 0.32 -1.7
1,423,772 - +2.4
1,423,828 - -0.1
1,423,943 + Dsui_1370 0.66 -0.4
1,423,953 + Dsui_1370 0.67 -0.3
1,423,966 - Dsui_1370 0.68 -0.6
1,423,971 - Dsui_1370 0.69 -0.4
1,424,107 + Dsui_1370 0.84 -1.9
1,424,135 + +2.1
1,424,156 - -2.8
1,424,164 + -0.7
1,424,258 + -0.4
1,424,286 - -1.6
1,424,289 + -0.5
1,424,444 - -0.5
1,424,457 + Dsui_1371 0.11 +1.5
1,424,638 + Dsui_1371 0.31 +0.9
1,424,638 + Dsui_1371 0.31 +3.1
1,424,646 - -1.9
1,424,684 - Dsui_1371 0.37 +0.1
1,424,707 + Dsui_1371 0.39 +0.2
1,424,730 + Dsui_1371 0.42 +1.0
1,424,866 - Dsui_1371 0.57 +0.7
1,424,900 + Dsui_1371 0.61 +0.8
1,424,921 - Dsui_1371 0.63 +1.1
1,424,958 + Dsui_1371 0.67 +0.9
1,424,966 - Dsui_1371 0.68 +1.2
1,425,040 + Dsui_1371 0.76 +0.6
1,425,056 - Dsui_1371 0.78 -0.2
1,425,060 + Dsui_1371 0.78 +1.4
1,425,138 - Dsui_1371 0.87 +1.2
1,425,142 - +2.1
1,425,210 + +1.1
1,425,210 + +3.8
1,425,210 + +1.2
1,425,218 - +1.7
1,425,304 - +1.5
1,425,416 - +0.9
1,425,446 + Dsui_1372 0.11 +0.4
1,425,484 + Dsui_1372 0.14 -1.1
1,425,558 - Dsui_1372 0.18 +1.3
1,425,580 - Dsui_1372 0.20 +0.6
1,425,584 + Dsui_1372 0.20 +1.1
1,425,614 - Dsui_1372 0.22 +1.4
1,425,618 + Dsui_1372 0.22 +1.7
1,425,742 + -3.6
1,425,848 - -1.7
1,425,872 - Dsui_1372 0.38 +0.8
1,425,881 - Dsui_1372 0.38 +1.3
1,425,995 - Dsui_1372 0.45 -2.3
1,426,055 + Dsui_1372 0.49 +0.4

Or see this region's nucleotide sequence