Strain Fitness in Dechlorosoma suillum PS around Dsui_1138

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1137 and Dsui_1138 overlap by 4 nucleotidesDsui_1138 and Dsui_1139 overlap by 4 nucleotidesDsui_1139 and Dsui_1140 overlap by 4 nucleotides Dsui_1137: Dsui_1137 - chromate transporter, chromate ion transporter family, at 1,190,260 to 1,191,624 _1137 Dsui_1138: Dsui_1138 - hypothetical protein, at 1,191,621 to 1,192,016 _1138 Dsui_1139: Dsui_1139 - hypothetical protein, at 1,192,013 to 1,192,468 _1139 Dsui_1140: Dsui_1140 - arabinose efflux permease family protein, at 1,192,465 to 1,193,676 _1140 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -1 0 1at 1190.623 kb on + strand, within Dsui_1137at 1190.654 kb on - strand, within Dsui_1137at 1190.858 kb on - strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.040 kb on - strand, within Dsui_1137at 1191.111 kb on - strand, within Dsui_1137at 1191.202 kb on - strand, within Dsui_1137at 1191.246 kb on + strand, within Dsui_1137at 1191.267 kb on + strand, within Dsui_1137at 1191.287 kb on + strand, within Dsui_1137at 1191.332 kb on + strand, within Dsui_1137at 1191.382 kb on + strand, within Dsui_1137at 1191.431 kb on + strand, within Dsui_1137at 1191.431 kb on + strand, within Dsui_1137at 1191.439 kb on - strand, within Dsui_1137at 1191.461 kb on - strand, within Dsui_1137at 1191.524 kb on + strandat 1191.531 kb on - strandat 1191.541 kb on + strandat 1191.543 kb on - strandat 1191.657 kb on - strandat 1191.739 kb on - strand, within Dsui_1138at 1191.741 kb on - strandat 1191.743 kb on + strand, within Dsui_1138at 1191.773 kb on - strand, within Dsui_1138at 1191.793 kb on + strand, within Dsui_1138at 1191.796 kb on + strand, within Dsui_1138at 1191.804 kb on - strand, within Dsui_1138at 1191.856 kb on - strand, within Dsui_1138at 1191.927 kb on - strand, within Dsui_1138at 1191.960 kb on - strand, within Dsui_1138at 1191.973 kb on + strand, within Dsui_1138at 1192.026 kb on + strandat 1192.173 kb on + strand, within Dsui_1139at 1192.174 kb on - strand, within Dsui_1139at 1192.182 kb on - strand, within Dsui_1139at 1192.206 kb on + strand, within Dsui_1139at 1192.236 kb on - strand, within Dsui_1139at 1192.241 kb on - strand, within Dsui_1139at 1192.252 kb on + strand, within Dsui_1139at 1192.327 kb on - strand, within Dsui_1139at 1192.406 kb on + strand, within Dsui_1139at 1192.450 kb on + strandat 1192.501 kb on - strandat 1192.704 kb on + strand, within Dsui_1140at 1192.712 kb on + strand, within Dsui_1140at 1192.779 kb on - strand, within Dsui_1140at 1192.799 kb on + strand, within Dsui_1140at 1192.952 kb on - strand, within Dsui_1140at 1192.952 kb on - strand, within Dsui_1140at 1192.952 kb on - strand, within Dsui_1140

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,190,623 + Dsui_1137 0.27 +0.6
1,190,654 - Dsui_1137 0.29 +0.3
1,190,858 - Dsui_1137 0.44 -0.1
1,191,032 + Dsui_1137 0.57 +0.7
1,191,032 + Dsui_1137 0.57 +0.6
1,191,032 + Dsui_1137 0.57 +1.4
1,191,032 + Dsui_1137 0.57 +0.3
1,191,032 + Dsui_1137 0.57 +0.4
1,191,040 - Dsui_1137 0.57 +1.2
1,191,111 - Dsui_1137 0.62 +0.5
1,191,202 - Dsui_1137 0.69 +0.4
1,191,246 + Dsui_1137 0.72 +0.8
1,191,267 + Dsui_1137 0.74 -0.8
1,191,287 + Dsui_1137 0.75 +0.7
1,191,332 + Dsui_1137 0.79 -1.3
1,191,382 + Dsui_1137 0.82 +0.7
1,191,431 + Dsui_1137 0.86 +0.4
1,191,431 + Dsui_1137 0.86 +1.0
1,191,439 - Dsui_1137 0.86 -0.1
1,191,461 - Dsui_1137 0.88 +0.1
1,191,524 + -0.1
1,191,531 - -0.9
1,191,541 + -0.0
1,191,543 - +0.5
1,191,657 - -0.0
1,191,739 - Dsui_1138 0.30 -0.3
1,191,741 - +1.1
1,191,743 + Dsui_1138 0.31 -0.7
1,191,773 - Dsui_1138 0.38 +0.1
1,191,793 + Dsui_1138 0.43 -0.4
1,191,796 + Dsui_1138 0.44 +0.9
1,191,804 - Dsui_1138 0.46 +0.5
1,191,856 - Dsui_1138 0.59 +0.2
1,191,927 - Dsui_1138 0.77 -0.3
1,191,960 - Dsui_1138 0.86 -0.7
1,191,973 + Dsui_1138 0.89 -0.4
1,192,026 + -0.5
1,192,173 + Dsui_1139 0.35 +0.9
1,192,174 - Dsui_1139 0.35 +0.6
1,192,182 - Dsui_1139 0.37 +1.1
1,192,206 + Dsui_1139 0.42 +1.6
1,192,236 - Dsui_1139 0.49 +0.8
1,192,241 - Dsui_1139 0.50 +1.0
1,192,252 + Dsui_1139 0.52 +0.6
1,192,327 - Dsui_1139 0.69 +0.8
1,192,406 + Dsui_1139 0.86 +0.5
1,192,450 + +0.4
1,192,501 - -0.4
1,192,704 + Dsui_1140 0.20 +0.5
1,192,712 + Dsui_1140 0.20 +1.4
1,192,779 - Dsui_1140 0.26 +0.2
1,192,799 + Dsui_1140 0.28 -0.1
1,192,952 - Dsui_1140 0.40 -0.2
1,192,952 - Dsui_1140 0.40 +0.4
1,192,952 - Dsui_1140 0.40 +0.1

Or see this region's nucleotide sequence