Strain Fitness in Dechlorosoma suillum PS around Dsui_1072

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1069 and Dsui_1070 are separated by 111 nucleotidesDsui_1070 and Dsui_1071 are separated by 21 nucleotidesDsui_1071 and Dsui_1072 are separated by 52 nucleotidesDsui_1072 and Dsui_1073 overlap by 4 nucleotides Dsui_1069: Dsui_1069 - Cytochrome c, at 1,103,211 to 1,103,885 _1069 Dsui_1070: Dsui_1070 - putative metal-binding protein, at 1,103,997 to 1,104,416 _1070 Dsui_1071: Dsui_1071 - hypothetical protein, at 1,104,438 to 1,104,779 _1071 Dsui_1072: Dsui_1072 - outer membrane protein, at 1,104,832 to 1,106,103 _1072 Dsui_1073: Dsui_1073 - RND family efflux transporter, MFP subunit, at 1,106,100 to 1,107,686 _1073 Position (kb) 1104 1105 1106 1107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1103.850 kb on + strandat 1103.860 kb on + strandat 1103.868 kb on - strandat 1103.868 kb on - strandat 1103.923 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1104.054 kb on - strand, within Dsui_1070at 1104.054 kb on - strand, within Dsui_1070at 1104.065 kb on + strand, within Dsui_1070at 1104.073 kb on - strand, within Dsui_1070at 1104.088 kb on + strand, within Dsui_1070at 1104.096 kb on - strand, within Dsui_1070at 1104.100 kb on + strand, within Dsui_1070at 1104.147 kb on - strand, within Dsui_1070at 1104.155 kb on + strand, within Dsui_1070at 1104.284 kb on + strand, within Dsui_1070at 1104.291 kb on + strand, within Dsui_1070at 1104.292 kb on - strand, within Dsui_1070at 1104.306 kb on - strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.318 kb on + strand, within Dsui_1070at 1104.367 kb on + strand, within Dsui_1070at 1104.381 kb on + strandat 1104.466 kb on + strandat 1104.474 kb on + strand, within Dsui_1071at 1104.476 kb on + strand, within Dsui_1071at 1104.476 kb on + strand, within Dsui_1071at 1104.484 kb on - strand, within Dsui_1071at 1104.542 kb on + strand, within Dsui_1071at 1104.556 kb on + strand, within Dsui_1071at 1104.556 kb on + strand, within Dsui_1071at 1104.580 kb on + strand, within Dsui_1071at 1104.590 kb on + strand, within Dsui_1071at 1104.633 kb on - strand, within Dsui_1071at 1104.687 kb on - strand, within Dsui_1071at 1104.703 kb on - strand, within Dsui_1071at 1104.909 kb on + strandat 1104.923 kb on + strandat 1104.931 kb on - strandat 1104.936 kb on - strandat 1104.936 kb on - strandat 1105.082 kb on - strand, within Dsui_1072at 1105.088 kb on + strand, within Dsui_1072at 1105.107 kb on - strand, within Dsui_1072at 1105.124 kb on + strand, within Dsui_1072at 1105.128 kb on - strand, within Dsui_1072at 1105.152 kb on - strand, within Dsui_1072at 1105.188 kb on + strand, within Dsui_1072at 1105.212 kb on - strand, within Dsui_1072at 1105.266 kb on - strand, within Dsui_1072at 1105.270 kb on + strand, within Dsui_1072at 1105.272 kb on + strand, within Dsui_1072at 1105.272 kb on + strand, within Dsui_1072at 1105.272 kb on + strand, within Dsui_1072at 1105.280 kb on - strand, within Dsui_1072at 1105.297 kb on - strand, within Dsui_1072at 1105.355 kb on + strand, within Dsui_1072at 1105.406 kb on + strand, within Dsui_1072at 1105.434 kb on + strand, within Dsui_1072at 1105.442 kb on - strand, within Dsui_1072at 1105.467 kb on + strand, within Dsui_1072at 1105.527 kb on + strand, within Dsui_1072at 1105.570 kb on - strand, within Dsui_1072at 1105.603 kb on + strand, within Dsui_1072at 1105.609 kb on + strand, within Dsui_1072at 1105.609 kb on - strand, within Dsui_1072at 1105.617 kb on + strand, within Dsui_1072at 1105.635 kb on + strand, within Dsui_1072at 1105.637 kb on + strand, within Dsui_1072at 1105.637 kb on + strand, within Dsui_1072at 1105.643 kb on - strand, within Dsui_1072at 1105.723 kb on + strand, within Dsui_1072at 1105.769 kb on + strand, within Dsui_1072at 1105.779 kb on - strand, within Dsui_1072at 1105.808 kb on + strand, within Dsui_1072at 1105.811 kb on - strand, within Dsui_1072at 1105.816 kb on - strand, within Dsui_1072at 1105.816 kb on - strand, within Dsui_1072at 1105.816 kb on - strand, within Dsui_1072at 1105.893 kb on - strand, within Dsui_1072at 1105.921 kb on - strand, within Dsui_1072at 1105.946 kb on - strand, within Dsui_1072at 1105.965 kb on - strand, within Dsui_1072at 1105.989 kb on + strandat 1106.000 kb on - strandat 1106.043 kb on - strandat 1106.053 kb on + strandat 1106.081 kb on - strandat 1106.097 kb on + strandat 1106.105 kb on - strandat 1106.136 kb on + strandat 1106.156 kb on + strandat 1106.161 kb on + strandat 1106.162 kb on - strandat 1106.164 kb on - strandat 1106.164 kb on - strandat 1106.166 kb on + strandat 1106.166 kb on + strandat 1106.174 kb on - strandat 1106.193 kb on + strandat 1106.224 kb on + strandat 1106.235 kb on + strandat 1106.282 kb on - strand, within Dsui_1073at 1106.348 kb on - strand, within Dsui_1073at 1106.370 kb on - strand, within Dsui_1073at 1106.370 kb on - strand, within Dsui_1073at 1106.450 kb on + strand, within Dsui_1073at 1106.471 kb on - strand, within Dsui_1073at 1106.489 kb on + strand, within Dsui_1073at 1106.489 kb on + strand, within Dsui_1073at 1106.531 kb on + strand, within Dsui_1073at 1106.531 kb on + strand, within Dsui_1073at 1106.531 kb on + strand, within Dsui_1073at 1106.531 kb on + strand, within Dsui_1073at 1106.538 kb on - strand, within Dsui_1073at 1106.539 kb on - strand, within Dsui_1073at 1106.588 kb on + strand, within Dsui_1073at 1106.593 kb on + strand, within Dsui_1073at 1106.593 kb on + strand, within Dsui_1073at 1106.593 kb on + strand, within Dsui_1073at 1106.593 kb on + strand, within Dsui_1073at 1106.594 kb on + strand, within Dsui_1073at 1106.596 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.601 kb on - strand, within Dsui_1073at 1106.603 kb on + strand, within Dsui_1073at 1106.611 kb on - strand, within Dsui_1073at 1106.613 kb on - strand, within Dsui_1073at 1106.640 kb on + strand, within Dsui_1073at 1106.640 kb on + strand, within Dsui_1073at 1106.641 kb on + strand, within Dsui_1073at 1106.648 kb on - strand, within Dsui_1073at 1106.648 kb on - strand, within Dsui_1073at 1106.648 kb on - strand, within Dsui_1073at 1106.650 kb on + strand, within Dsui_1073at 1106.673 kb on + strand, within Dsui_1073at 1106.676 kb on - strand, within Dsui_1073at 1106.697 kb on + strand, within Dsui_1073at 1106.705 kb on - strand, within Dsui_1073at 1106.747 kb on + strand, within Dsui_1073at 1106.756 kb on - strand, within Dsui_1073at 1106.787 kb on - strand, within Dsui_1073at 1106.853 kb on + strand, within Dsui_1073at 1106.853 kb on + strand, within Dsui_1073at 1106.853 kb on + strand, within Dsui_1073at 1106.861 kb on - strand, within Dsui_1073at 1106.883 kb on + strand, within Dsui_1073at 1106.891 kb on - strand, within Dsui_1073at 1106.893 kb on + strand, within Dsui_1073at 1106.897 kb on - strand, within Dsui_1073at 1106.901 kb on - strand, within Dsui_1073at 1106.925 kb on + strand, within Dsui_1073at 1106.933 kb on - strand, within Dsui_1073at 1106.936 kb on + strand, within Dsui_1073at 1106.944 kb on - strand, within Dsui_1073at 1106.950 kb on - strand, within Dsui_1073at 1106.982 kb on + strand, within Dsui_1073at 1106.997 kb on - strand, within Dsui_1073at 1107.022 kb on + strand, within Dsui_1073at 1107.022 kb on - strand, within Dsui_1073at 1107.031 kb on - strand, within Dsui_1073at 1107.041 kb on + strand, within Dsui_1073at 1107.049 kb on - strand, within Dsui_1073at 1107.065 kb on + strand, within Dsui_1073at 1107.073 kb on - strand, within Dsui_1073at 1107.083 kb on + strand, within Dsui_1073at 1107.097 kb on + strand, within Dsui_1073

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,103,850 + +0.6
1,103,860 + -0.3
1,103,868 - +0.1
1,103,868 - -2.9
1,103,923 - +0.2
1,103,975 - -0.6
1,103,975 - -0.5
1,103,975 - -0.5
1,103,975 - -0.0
1,104,054 - Dsui_1070 0.14 -0.1
1,104,054 - Dsui_1070 0.14 -0.5
1,104,065 + Dsui_1070 0.16 -0.3
1,104,073 - Dsui_1070 0.18 +0.2
1,104,088 + Dsui_1070 0.22 -0.4
1,104,096 - Dsui_1070 0.24 -0.4
1,104,100 + Dsui_1070 0.25 -0.6
1,104,147 - Dsui_1070 0.36 +1.5
1,104,155 + Dsui_1070 0.38 -3.0
1,104,284 + Dsui_1070 0.68 +0.0
1,104,291 + Dsui_1070 0.70 +0.1
1,104,292 - Dsui_1070 0.70 +1.1
1,104,306 - Dsui_1070 0.74 -0.5
1,104,318 + Dsui_1070 0.76 -0.2
1,104,318 + Dsui_1070 0.76 +0.4
1,104,318 + Dsui_1070 0.76 -1.0
1,104,318 + Dsui_1070 0.76 -0.7
1,104,367 + Dsui_1070 0.88 +0.6
1,104,381 + -0.1
1,104,466 + -0.8
1,104,474 + Dsui_1071 0.11 -0.9
1,104,476 + Dsui_1071 0.11 +0.7
1,104,476 + Dsui_1071 0.11 -0.2
1,104,484 - Dsui_1071 0.13 -1.1
1,104,542 + Dsui_1071 0.30 -0.0
1,104,556 + Dsui_1071 0.35 +1.4
1,104,556 + Dsui_1071 0.35 -0.5
1,104,580 + Dsui_1071 0.42 +0.3
1,104,590 + Dsui_1071 0.44 -0.4
1,104,633 - Dsui_1071 0.57 -1.6
1,104,687 - Dsui_1071 0.73 +0.5
1,104,703 - Dsui_1071 0.77 +0.4
1,104,909 + -0.0
1,104,923 + +1.2
1,104,931 - +0.3
1,104,936 - +0.3
1,104,936 - -0.2
1,105,082 - Dsui_1072 0.20 +1.5
1,105,088 + Dsui_1072 0.20 -0.0
1,105,107 - Dsui_1072 0.22 +0.0
1,105,124 + Dsui_1072 0.23 -0.6
1,105,128 - Dsui_1072 0.23 -0.0
1,105,152 - Dsui_1072 0.25 -0.6
1,105,188 + Dsui_1072 0.28 +1.2
1,105,212 - Dsui_1072 0.30 -3.2
1,105,266 - Dsui_1072 0.34 +0.3
1,105,270 + Dsui_1072 0.34 +0.4
1,105,272 + Dsui_1072 0.35 +0.2
1,105,272 + Dsui_1072 0.35 +0.9
1,105,272 + Dsui_1072 0.35 +0.4
1,105,280 - Dsui_1072 0.35 -1.1
1,105,297 - Dsui_1072 0.37 -0.3
1,105,355 + Dsui_1072 0.41 +1.9
1,105,406 + Dsui_1072 0.45 +0.2
1,105,434 + Dsui_1072 0.47 +1.4
1,105,442 - Dsui_1072 0.48 +0.3
1,105,467 + Dsui_1072 0.50 +0.0
1,105,527 + Dsui_1072 0.55 -1.1
1,105,570 - Dsui_1072 0.58 +0.2
1,105,603 + Dsui_1072 0.61 -3.0
1,105,609 + Dsui_1072 0.61 -1.0
1,105,609 - Dsui_1072 0.61 +0.2
1,105,617 + Dsui_1072 0.62 +0.4
1,105,635 + Dsui_1072 0.63 +0.6
1,105,637 + Dsui_1072 0.63 -1.1
1,105,637 + Dsui_1072 0.63 -1.6
1,105,643 - Dsui_1072 0.64 +0.7
1,105,723 + Dsui_1072 0.70 +0.1
1,105,769 + Dsui_1072 0.74 -0.4
1,105,779 - Dsui_1072 0.74 -1.7
1,105,808 + Dsui_1072 0.77 -0.3
1,105,811 - Dsui_1072 0.77 -3.4
1,105,816 - Dsui_1072 0.77 -0.4
1,105,816 - Dsui_1072 0.77 +0.4
1,105,816 - Dsui_1072 0.77 -0.9
1,105,893 - Dsui_1072 0.83 -0.7
1,105,921 - Dsui_1072 0.86 -1.4
1,105,946 - Dsui_1072 0.88 -0.9
1,105,965 - Dsui_1072 0.89 -0.4
1,105,989 + +1.3
1,106,000 - +0.2
1,106,043 - -0.3
1,106,053 + -0.6
1,106,081 - +0.8
1,106,097 + +0.2
1,106,105 - -0.7
1,106,136 + +0.4
1,106,156 + +0.8
1,106,161 + -0.0
1,106,162 - -0.6
1,106,164 - +0.9
1,106,164 - -0.0
1,106,166 + +0.2
1,106,166 + +0.9
1,106,174 - -0.3
1,106,193 + -0.1
1,106,224 + +1.2
1,106,235 + +0.1
1,106,282 - Dsui_1073 0.11 +0.5
1,106,348 - Dsui_1073 0.16 -0.3
1,106,370 - Dsui_1073 0.17 +0.2
1,106,370 - Dsui_1073 0.17 -0.2
1,106,450 + Dsui_1073 0.22 -0.0
1,106,471 - Dsui_1073 0.23 -0.3
1,106,489 + Dsui_1073 0.25 -0.3
1,106,489 + Dsui_1073 0.25 -0.5
1,106,531 + Dsui_1073 0.27 +1.6
1,106,531 + Dsui_1073 0.27 -1.1
1,106,531 + Dsui_1073 0.27 -2.2
1,106,531 + Dsui_1073 0.27 +1.4
1,106,538 - Dsui_1073 0.28 -0.9
1,106,539 - Dsui_1073 0.28 +0.1
1,106,588 + Dsui_1073 0.31 +1.3
1,106,593 + Dsui_1073 0.31 +0.3
1,106,593 + Dsui_1073 0.31 -0.0
1,106,593 + Dsui_1073 0.31 +0.7
1,106,593 + Dsui_1073 0.31 -0.8
1,106,594 + Dsui_1073 0.31 +0.4
1,106,596 - Dsui_1073 0.31 -0.2
1,106,601 - Dsui_1073 0.32 -0.4
1,106,601 - Dsui_1073 0.32 -0.2
1,106,601 - Dsui_1073 0.32 +0.3
1,106,601 - Dsui_1073 0.32 +0.6
1,106,601 - Dsui_1073 0.32 -0.3
1,106,601 - Dsui_1073 0.32 -0.6
1,106,603 + Dsui_1073 0.32 +0.2
1,106,611 - Dsui_1073 0.32 -1.3
1,106,613 - Dsui_1073 0.32 +0.6
1,106,640 + Dsui_1073 0.34 +0.2
1,106,640 + Dsui_1073 0.34 +0.2
1,106,641 + Dsui_1073 0.34 +0.7
1,106,648 - Dsui_1073 0.35 +0.5
1,106,648 - Dsui_1073 0.35 +0.1
1,106,648 - Dsui_1073 0.35 -4.6
1,106,650 + Dsui_1073 0.35 +0.2
1,106,673 + Dsui_1073 0.36 +0.6
1,106,676 - Dsui_1073 0.36 +1.1
1,106,697 + Dsui_1073 0.38 +0.0
1,106,705 - Dsui_1073 0.38 +0.0
1,106,747 + Dsui_1073 0.41 -0.4
1,106,756 - Dsui_1073 0.41 -1.1
1,106,787 - Dsui_1073 0.43 -0.1
1,106,853 + Dsui_1073 0.47 -2.0
1,106,853 + Dsui_1073 0.47 -0.4
1,106,853 + Dsui_1073 0.47 -0.1
1,106,861 - Dsui_1073 0.48 -1.5
1,106,883 + Dsui_1073 0.49 +0.9
1,106,891 - Dsui_1073 0.50 -0.5
1,106,893 + Dsui_1073 0.50 -1.5
1,106,897 - Dsui_1073 0.50 -0.8
1,106,901 - Dsui_1073 0.50 -1.3
1,106,925 + Dsui_1073 0.52 -1.8
1,106,933 - Dsui_1073 0.52 -1.8
1,106,936 + Dsui_1073 0.53 +0.5
1,106,944 - Dsui_1073 0.53 +1.1
1,106,950 - Dsui_1073 0.54 +0.4
1,106,982 + Dsui_1073 0.56 +0.5
1,106,997 - Dsui_1073 0.57 +0.2
1,107,022 + Dsui_1073 0.58 -1.0
1,107,022 - Dsui_1073 0.58 -0.4
1,107,031 - Dsui_1073 0.59 -0.2
1,107,041 + Dsui_1073 0.59 -3.3
1,107,049 - Dsui_1073 0.60 +0.0
1,107,065 + Dsui_1073 0.61 -1.4
1,107,073 - Dsui_1073 0.61 +0.4
1,107,083 + Dsui_1073 0.62 +0.9
1,107,097 + Dsui_1073 0.63 +0.8

Or see this region's nucleotide sequence