Strain Fitness in Dechlorosoma suillum PS around Dsui_0629

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0628 and Dsui_0629 overlap by 4 nucleotidesDsui_0629 and Dsui_0630 are separated by 72 nucleotides Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515 _0628 Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435 _0629 Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812 _0630 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.617 kb on + strand, within Dsui_0628at 621.617 kb on + strand, within Dsui_0628at 621.639 kb on - strand, within Dsui_0628at 621.689 kb on + strand, within Dsui_0628at 621.828 kb on + strand, within Dsui_0628at 621.858 kb on + strand, within Dsui_0628at 622.029 kb on + strand, within Dsui_0628at 622.166 kb on + strand, within Dsui_0628at 622.261 kb on + strandat 622.278 kb on + strand, within Dsui_0628at 622.301 kb on - strand, within Dsui_0628at 622.413 kb on + strandat 622.501 kb on - strandat 622.510 kb on + strandat 622.510 kb on + strandat 622.511 kb on - strandat 622.595 kb on + strandat 622.676 kb on - strand, within Dsui_0629at 622.857 kb on + strand, within Dsui_0629at 622.880 kb on - strand, within Dsui_0629at 622.920 kb on + strand, within Dsui_0629at 622.928 kb on - strand, within Dsui_0629at 623.013 kb on + strand, within Dsui_0629at 623.057 kb on + strand, within Dsui_0629at 623.132 kb on - strandat 623.280 kb on + strand, within Dsui_0629at 623.285 kb on + strand, within Dsui_0629at 623.344 kb on - strandat 623.372 kb on - strandat 623.396 kb on + strandat 623.396 kb on + strandat 623.644 kb on + strand, within Dsui_0630at 623.659 kb on + strand, within Dsui_0630at 623.785 kb on + strand, within Dsui_0630at 623.785 kb on + strand, within Dsui_0630at 623.948 kb on - strand, within Dsui_0630at 623.948 kb on - strand, within Dsui_0630at 624.004 kb on + strand, within Dsui_0630at 624.124 kb on + strandat 624.124 kb on + strand, within Dsui_0630at 624.170 kb on + strand, within Dsui_0630at 624.178 kb on - strand, within Dsui_0630at 624.223 kb on - strand, within Dsui_0630at 624.290 kb on - strand, within Dsui_0630at 624.295 kb on + strand, within Dsui_0630at 624.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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621,617 + Dsui_0628 0.17 -3.0
621,617 + Dsui_0628 0.17 -0.0
621,639 - Dsui_0628 0.19 +0.7
621,689 + Dsui_0628 0.23 +0.1
621,828 + Dsui_0628 0.36 -0.2
621,858 + Dsui_0628 0.39 -0.8
622,029 + Dsui_0628 0.55 -1.3
622,166 + Dsui_0628 0.68 -0.2
622,261 + -1.5
622,278 + Dsui_0628 0.78 -0.4
622,301 - Dsui_0628 0.80 +0.5
622,413 + +0.4
622,501 - +0.3
622,510 + +1.8
622,510 + +0.0
622,511 - +1.1
622,595 + +0.0
622,676 - Dsui_0629 0.18 +0.4
622,857 + Dsui_0629 0.37 +0.1
622,880 - Dsui_0629 0.40 +0.6
622,920 + Dsui_0629 0.44 -0.0
622,928 - Dsui_0629 0.45 +1.0
623,013 + Dsui_0629 0.54 -0.2
623,057 + Dsui_0629 0.59 -0.1
623,132 - +1.6
623,280 + Dsui_0629 0.83 +0.0
623,285 + Dsui_0629 0.84 -0.1
623,344 - +0.6
623,372 - +0.2
623,396 + +0.6
623,396 + +0.5
623,644 + Dsui_0630 0.10 +0.2
623,659 + Dsui_0630 0.12 +0.7
623,785 + Dsui_0630 0.21 +0.4
623,785 + Dsui_0630 0.21 -0.0
623,948 - Dsui_0630 0.34 +0.6
623,948 - Dsui_0630 0.34 -0.8
624,004 + Dsui_0630 0.38 +0.2
624,124 + +0.2
624,124 + Dsui_0630 0.47 +2.6
624,170 + Dsui_0630 0.51 +0.7
624,178 - Dsui_0630 0.51 +0.8
624,223 - Dsui_0630 0.55 +1.1
624,290 - Dsui_0630 0.60 +0.5
624,295 + Dsui_0630 0.60 +0.4
624,355 + +0.6

Or see this region's nucleotide sequence