Strain Fitness in Dechlorosoma suillum PS around Dsui_0489

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0487 and Dsui_0488 overlap by 4 nucleotidesDsui_0488 and Dsui_0489 are separated by 72 nucleotidesDsui_0489 and Dsui_0490 are separated by 68 nucleotides Dsui_0487: Dsui_0487 - hemerythrin HHE cation binding domain-containing protein, at 490,087 to 490,620 _0487 Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474 _0488 Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272 _0489 Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861 _0490 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 490.611 kb on - strandat 490.715 kb on + strand, within Dsui_0488at 490.723 kb on - strand, within Dsui_0488at 490.728 kb on - strand, within Dsui_0488at 490.738 kb on - strand, within Dsui_0488at 490.791 kb on - strand, within Dsui_0488at 490.849 kb on + strand, within Dsui_0488at 490.899 kb on + strandat 490.991 kb on - strand, within Dsui_0488at 491.078 kb on + strand, within Dsui_0488at 491.081 kb on - strand, within Dsui_0488at 491.182 kb on + strand, within Dsui_0488at 491.259 kb on + strand, within Dsui_0488at 491.300 kb on - strand, within Dsui_0488at 491.355 kb on - strand, within Dsui_0488at 491.357 kb on + strand, within Dsui_0488at 491.395 kb on + strandat 491.436 kb on + strandat 491.442 kb on - strandat 491.568 kb on + strandat 491.576 kb on - strandat 491.576 kb on - strandat 491.576 kb on - strandat 491.577 kb on - strandat 491.613 kb on - strandat 491.615 kb on + strandat 491.717 kb on - strand, within Dsui_0489at 492.008 kb on - strand, within Dsui_0489at 492.108 kb on - strand, within Dsui_0489at 492.196 kb on + strandat 492.199 kb on - strand, within Dsui_0489at 492.204 kb on - strandat 492.212 kb on + strandat 492.237 kb on - strandat 492.252 kb on - strandat 492.261 kb on - strandat 492.261 kb on - strandat 492.261 kb on - strandat 492.273 kb on + strandat 492.273 kb on + strandat 492.397 kb on - strandat 492.416 kb on + strandat 492.443 kb on + strandat 492.522 kb on - strand, within Dsui_0490at 492.527 kb on - strand, within Dsui_0490at 492.541 kb on - strand, within Dsui_0490at 492.907 kb on - strand, within Dsui_0490at 492.927 kb on - strand, within Dsui_0490at 492.967 kb on + strand, within Dsui_0490at 492.977 kb on + strand, within Dsui_0490at 493.086 kb on + strand, within Dsui_0490at 493.238 kb on + strand, within Dsui_0490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
490,611 - +0.4
490,715 + Dsui_0488 0.11 -0.4
490,723 - Dsui_0488 0.12 +0.8
490,728 - Dsui_0488 0.13 +1.3
490,738 - Dsui_0488 0.14 +0.5
490,791 - Dsui_0488 0.20 +0.7
490,849 + Dsui_0488 0.27 -0.0
490,899 + -0.8
490,991 - Dsui_0488 0.44 -0.1
491,078 + Dsui_0488 0.54 +0.2
491,081 - Dsui_0488 0.54 -0.5
491,182 + Dsui_0488 0.66 +0.0
491,259 + Dsui_0488 0.75 -0.2
491,300 - Dsui_0488 0.80 +1.1
491,355 - Dsui_0488 0.86 +0.8
491,357 + Dsui_0488 0.86 +0.5
491,395 + +0.2
491,436 + -1.7
491,442 - -0.1
491,568 + -3.3
491,576 - +1.5
491,576 - +0.7
491,576 - +0.8
491,577 - +1.1
491,613 - +1.9
491,615 + -0.0
491,717 - Dsui_0489 0.23 +0.8
492,008 - Dsui_0489 0.63 +0.9
492,108 - Dsui_0489 0.77 +1.4
492,196 + +0.8
492,199 - Dsui_0489 0.90 +1.3
492,204 - +1.2
492,212 + -0.6
492,237 - -0.6
492,252 - +1.3
492,261 - +1.2
492,261 - -1.3
492,261 - -0.4
492,273 + -0.4
492,273 + -0.4
492,397 - +1.4
492,416 + +0.9
492,443 + +1.2
492,522 - Dsui_0490 0.12 +1.1
492,527 - Dsui_0490 0.12 +0.4
492,541 - Dsui_0490 0.13 +0.5
492,907 - Dsui_0490 0.37 +4.2
492,927 - Dsui_0490 0.39 -0.9
492,967 + Dsui_0490 0.41 +1.0
492,977 + Dsui_0490 0.42 -0.9
493,086 + Dsui_0490 0.49 +1.1
493,238 + Dsui_0490 0.59 +0.2

Or see this region's nucleotide sequence