Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0393 and Dsui_0394 are separated by 65 nucleotides Dsui_0394 and Dsui_0395 are separated by 22 nucleotides Dsui_0395 and Dsui_0396 are separated by 124 nucleotides
Dsui_0393: Dsui_0393 - glycosyltransferase, at 391,436 to 392,680
_0393
Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681
_0394
Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171
_0395
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 391.748 kb on + strand at 391.778 kb on + strand, within Dsui_0393 at 391.799 kb on + strand, within Dsui_0393 at 391.807 kb on - strand, within Dsui_0393 at 391.903 kb on - strand at 391.903 kb on - strand at 391.913 kb on - strand at 391.938 kb on - strand, within Dsui_0393 at 392.061 kb on - strand, within Dsui_0393 at 392.081 kb on - strand at 392.099 kb on - strand at 392.125 kb on + strand, within Dsui_0393 at 392.194 kb on - strand at 392.237 kb on + strand, within Dsui_0393 at 392.378 kb on - strand at 392.396 kb on - strand at 392.437 kb on + strand at 392.445 kb on - strand, within Dsui_0393 at 392.518 kb on + strand, within Dsui_0393 at 392.680 kb on + strand at 392.705 kb on + strand at 392.748 kb on - strand at 392.765 kb on - strand at 392.821 kb on - strand at 392.912 kb on + strand, within Dsui_0394 at 392.922 kb on + strand, within Dsui_0394 at 393.001 kb on - strand at 393.001 kb on - strand at 393.001 kb on - strand at 393.033 kb on + strand, within Dsui_0394 at 393.041 kb on - strand at 393.051 kb on + strand, within Dsui_0394 at 393.054 kb on + strand, within Dsui_0394 at 393.057 kb on - strand at 393.103 kb on + strand, within Dsui_0394 at 393.110 kb on + strand, within Dsui_0394 at 393.128 kb on - strand, within Dsui_0394 at 393.207 kb on - strand, within Dsui_0394 at 393.252 kb on - strand at 393.277 kb on + strand, within Dsui_0394 at 393.299 kb on - strand, within Dsui_0394 at 393.319 kb on - strand, within Dsui_0394 at 393.423 kb on - strand, within Dsui_0394 at 393.498 kb on - strand at 393.514 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.683 kb on - strand at 393.795 kb on - strand at 393.976 kb on + strand, within Dsui_0395 at 394.091 kb on - strand, within Dsui_0395 at 394.172 kb on + strand at 394.172 kb on + strand at 394.187 kb on - strand at 394.287 kb on + strand at 394.301 kb on - strand at 394.362 kb on - strand at 394.507 kb on - strand, within Dsui_0396 at 394.529 kb on + strand, within Dsui_0396 at 394.625 kb on - strand, within Dsui_0396 at 394.662 kb on - strand, within Dsui_0396
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 391,748 + +2.3 391,778 + Dsui_0393 0.27 -0.1 391,799 + Dsui_0393 0.29 +0.2 391,807 - Dsui_0393 0.30 +1.4 391,903 - -2.3 391,903 - -3.9 391,913 - -0.1 391,938 - Dsui_0393 0.40 +0.0 392,061 - Dsui_0393 0.50 -0.4 392,081 - -0.1 392,099 - +0.9 392,125 + Dsui_0393 0.55 -1.9 392,194 - -1.8 392,237 + Dsui_0393 0.64 +0.4 392,378 - +0.1 392,396 - -2.3 392,437 + -2.2 392,445 - Dsui_0393 0.81 -1.0 392,518 + Dsui_0393 0.87 -0.6 392,680 + -1.9 392,705 + +0.3 392,748 - +0.0 392,765 - -0.3 392,821 - -0.7 392,912 + Dsui_0394 0.18 +0.5 392,922 + Dsui_0394 0.19 -0.1 393,001 - -1.7 393,001 - -0.7 393,001 - -0.6 393,033 + Dsui_0394 0.31 +0.5 393,041 - -0.2 393,051 + Dsui_0394 0.33 -0.2 393,054 + Dsui_0394 0.33 +0.4 393,057 - +0.2 393,103 + Dsui_0394 0.38 +0.8 393,110 + Dsui_0394 0.39 +0.6 393,128 - Dsui_0394 0.41 -1.4 393,207 - Dsui_0394 0.49 -0.3 393,252 - +1.4 393,277 + Dsui_0394 0.57 -0.2 393,299 - Dsui_0394 0.59 -0.5 393,319 - Dsui_0394 0.61 -0.6 393,423 - Dsui_0394 0.72 -1.6 393,498 - -1.8 393,514 + Dsui_0394 0.82 -0.4 393,519 + Dsui_0394 0.83 +1.0 393,519 + Dsui_0394 0.83 -0.2 393,683 - +0.5 393,795 - -1.9 393,976 + Dsui_0395 0.58 +1.9 394,091 - Dsui_0395 0.83 +1.5 394,172 + +0.5 394,172 + +1.0 394,187 - +0.9 394,287 + +1.5 394,301 - -0.1 394,362 - +0.0 394,507 - Dsui_0396 0.28 -1.2 394,529 + Dsui_0396 0.31 -0.0 394,625 - Dsui_0396 0.43 +2.2 394,662 - Dsui_0396 0.48 +0.2
Or see this region's nucleotide sequence